Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.08999 * 117.49664 * 0.02562 * 5 2 1 7 7 C 1.52997 * 117.49924 * 215.02950 * 5 2 1 8 8 C 1.50706 * 109.47058 * 174.99700 * 7 5 2 9 9 O 1.21275 * 120.00039 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99787 * 179.97438 * 8 7 5 11 11 C 1.46494 * 119.99897 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47414 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99677 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00283 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00214 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00135 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47010 * 120.00064 * 16 14 12 19 19 H 1.48496 * 109.47312 * 240.00089 * 16 14 12 20 20 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 21 21 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 22 22 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 23 23 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 24 24 H 1.08999 * 117.49959 * 144.99502 * 4 2 1 25 25 H 1.08997 * 109.46992 * 294.99355 * 7 5 2 26 26 H 1.08999 * 109.47047 * 54.99913 * 7 5 2 27 27 H 0.97002 * 119.99928 * 0.02562 * 10 8 7 28 28 H 1.08997 * 109.47609 * 300.00404 * 11 10 8 29 29 H 1.09005 * 109.47100 * 60.00114 * 11 10 8 30 30 H 0.97000 * 120.00328 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8583 1.2685 7 6 3.5483 -0.7752 1.4727 8 6 4.0210 -1.9669 2.2649 9 8 3.3727 -2.9919 2.2634 10 7 5.1647 -1.8940 2.9741 11 6 5.6239 -3.0523 3.7446 12 6 6.9162 -2.7120 4.4412 13 1 7.3521 -1.7311 4.3215 14 6 7.5426 -3.6531 5.2303 15 7 7.0126 -4.8480 5.3748 16 14 9.1448 -3.2315 6.0932 17 1 9.5279 -1.8336 5.7704 18 1 8.9675 -3.3693 7.5612 19 1 10.2123 -4.1563 5.6346 20 1 -0.3633 0.0792 1.0246 21 1 -0.3634 0.8478 -0.5809 22 1 -0.3634 -0.9269 -0.4438 23 1 1.6112 -1.8584 -1.2685 24 1 3.1713 -0.8746 -1.2689 25 1 4.3019 -0.5098 0.7312 26 1 3.3875 0.0675 2.1451 27 1 5.6835 -1.0744 2.9749 28 1 4.8705 -3.3171 4.4864 29 1 5.7841 -3.8954 3.0725 30 1 7.4535 -5.5103 5.9298 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379321652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = -58.538334 kcal Electronic energy + Delta-G solvation = -11960.008392 eV Core-core repulsion = 9754.287489 eV Total energy + Delta-G solvation = -2205.720903 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64645 -38.51093 -36.11942 -34.35636 -31.61724 -29.40744 -28.03160 -24.73549 -22.40508 -21.38470 -20.94072 -18.93771 -17.47301 -17.10684 -16.52193 -16.22732 -15.43482 -15.15166 -14.49686 -14.16227 -13.97541 -13.85767 -13.26958 -13.02790 -12.84998 -12.73950 -12.29625 -12.21877 -12.16018 -11.46581 -10.93109 -10.83154 -10.79731 -10.49658 -9.82321 -8.30016 -6.47038 1.43097 1.44472 1.58087 1.80085 2.32145 2.57311 2.93458 3.04967 3.76538 3.87254 3.99476 4.18672 4.47944 4.57950 4.67157 4.80914 4.94148 4.98112 5.00617 5.13576 5.22177 5.22794 5.34533 5.48447 5.52663 5.70559 5.84514 6.64818 6.93156 7.22952 7.52423 8.82682 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.098077 B = 0.005804 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.420485 B = 4822.985144 C = 4957.948626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.133 4.133 3 H 0.125 0.875 4 C -0.177 4.177 5 C -0.161 4.161 6 H 0.083 0.917 7 C -0.094 4.094 8 C 0.493 3.507 9 O -0.607 6.607 10 N -0.710 5.710 11 C 0.264 3.736 12 C -0.556 4.556 13 H 0.085 0.915 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.987 3.013 17 H -0.252 1.252 18 H -0.279 1.279 19 H -0.279 1.279 20 H 0.057 0.943 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.409 0.591 28 H -0.015 1.015 29 H -0.015 1.015 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 13.180 -9.294 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 H 0.143 0.857 4 C -0.214 4.214 5 C -0.180 4.180 6 H 0.101 0.899 7 C -0.133 4.133 8 C 0.281 3.719 9 O -0.489 6.489 10 N -0.360 5.360 11 C 0.141 3.859 12 C -0.593 4.593 13 H 0.103 0.897 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.810 3.190 17 H -0.175 1.175 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.076 0.924 21 H 0.097 0.903 22 H 0.069 0.931 23 H 0.108 0.892 24 H 0.123 0.877 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.245 0.755 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.448 12.295 -9.205 16.657 hybrid contribution 0.828 -0.420 0.669 1.144 sum -5.620 11.875 -8.536 15.667 Atomic orbital electron populations 1.21412 0.92321 1.02394 1.02115 1.22550 0.95753 0.94522 1.02263 0.85742 1.23310 1.03253 1.01717 0.93097 1.22076 0.98159 1.03044 0.94710 0.89855 1.21218 0.97309 0.95016 0.99747 1.21606 0.80315 0.90497 0.79494 1.90613 1.57428 1.34857 1.66006 1.46231 1.24185 1.17363 1.48182 1.18543 0.93871 0.84314 0.89219 1.21667 1.07032 1.00682 1.29957 0.89679 1.26103 1.02287 0.94344 0.96985 1.70152 1.41488 1.05884 1.39637 0.85077 0.77204 0.79121 0.77593 1.17513 1.20434 1.20432 0.92360 0.90298 0.93114 0.89201 0.87665 0.86455 0.86229 0.75476 0.99690 0.99694 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 10.19 71.98 0.73 -1.41 16 2 C -0.13 -2.54 6.12 -10.79 -0.07 -2.61 16 3 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.18 -3.91 9.83 30.62 0.30 -3.61 16 5 C -0.16 -4.35 5.14 -10.77 -0.06 -4.41 16 6 H 0.08 2.84 7.31 -2.39 -0.02 2.82 16 7 C -0.09 -2.49 5.98 29.85 0.18 -2.31 16 8 C 0.49 20.22 7.83 87.66 0.69 20.90 16 9 O -0.61 -31.30 15.56 -3.02 -0.05 -31.35 16 10 N -0.71 -30.59 5.55 -466.80 -2.59 -33.18 16 11 C 0.26 14.84 5.43 85.63 0.46 15.31 16 12 C -0.56 -30.62 9.28 25.60 0.24 -30.39 16 13 H 0.09 4.22 7.60 -2.91 -0.02 4.19 16 14 C 0.00 0.12 5.46 84.65 0.46 0.58 16 15 N -0.93 -57.06 13.29 21.44 0.28 -56.77 16 16 Si 0.99 42.53 29.54 68.60 2.03 44.56 16 17 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 20 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.05 0.91 7.90 -2.39 -0.02 0.90 16 23 H 0.09 2.00 8.05 -2.38 -0.02 1.98 16 24 H 0.11 2.03 8.04 -2.39 -0.02 2.01 16 25 H 0.12 2.47 7.88 -2.39 -0.02 2.46 16 26 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16 28 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H -0.01 -0.95 8.14 -2.38 -0.02 -0.96 16 30 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -72.27 262.75 2.96 -69.31 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.35 Total: 15.38 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 2.94 Total: -7.94 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -2.30 Total: -89.95 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.05 Total: -31.35 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -72.27 2.96 -69.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.769 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds