Wall clock time and date at job start Mon Mar 30 2020 02:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 5 5 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 6 6 H 1.08999 * 117.49959 * 144.99502 * 5 2 1 7 7 C 1.53008 * 117.49506 * 0.02562 * 5 2 1 8 8 C 1.50703 * 109.46682 * 174.99705 * 7 5 2 9 9 O 1.21279 * 120.00140 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99467 * 179.97438 * 8 7 5 11 11 C 1.46503 * 119.99579 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47005 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99975 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00097 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00026 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00184 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47312 * 90.00086 * 16 14 12 18 18 H 1.48505 * 109.46858 * 210.00227 * 16 14 12 19 19 H 1.48500 * 109.47043 * 329.99901 * 16 14 12 20 20 H 1.08997 * 109.47260 * 205.57907 * 1 2 3 21 21 H 1.09000 * 109.47658 * 325.58288 * 1 2 3 22 22 H 1.09001 * 109.47132 * 85.58115 * 1 2 3 23 23 H 1.09000 * 117.49996 * 215.00804 * 4 2 1 24 24 H 1.08999 * 117.49664 * 0.02562 * 4 2 1 25 25 H 1.08995 * 109.46873 * 295.00008 * 7 5 2 26 26 H 1.08998 * 109.47018 * 55.00518 * 7 5 2 27 27 H 0.96993 * 120.00649 * 0.02562 * 10 8 7 28 28 H 1.09002 * 109.47276 * 300.00346 * 11 10 8 29 29 H 1.09006 * 109.47061 * 60.00724 * 11 10 8 30 30 H 0.96999 * 120.00290 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7653 6 1 3.1713 -0.8746 -1.2689 7 6 1.3588 -2.1554 -1.4726 8 6 2.2301 -3.0958 -2.2647 9 8 3.4345 -2.9529 -2.2633 10 7 1.6710 -4.0963 -2.9739 11 6 2.5181 -5.0109 -3.7435 12 6 1.6537 -6.0299 -4.4402 13 1 0.5807 -5.9991 -4.3219 14 6 2.2327 -7.0016 -5.2286 15 7 3.5395 -7.0394 -5.3722 16 14 1.1612 -8.2642 -6.0928 17 1 0.7794 -7.7545 -7.4343 18 1 1.9158 -9.5345 -6.2422 19 1 -0.0634 -8.5076 -5.2888 20 1 -0.3633 -0.9269 0.4437 21 1 -0.3634 0.8477 0.5808 22 1 -0.3633 0.0792 -1.0246 23 1 3.1713 -0.8747 1.2690 24 1 1.6112 -1.8583 1.2685 25 1 0.7943 -2.7207 -0.7311 26 1 0.6679 -1.6469 -2.1451 27 1 0.7079 -4.2109 -2.9747 28 1 3.0827 -4.4459 -4.4852 29 1 3.2090 -5.5192 -3.0707 30 1 3.9469 -7.7228 -5.9272 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379321653.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:49 Heat of formation + Delta-G solvation = -35.817806 kcal Electronic energy + Delta-G solvation = -12048.672121 eV Core-core repulsion = 9843.936454 eV Total energy + Delta-G solvation = -2204.735667 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.12328 -37.39991 -34.12553 -32.30891 -29.86422 -28.27318 -26.72371 -22.75125 -21.44606 -20.02528 -19.02384 -17.24463 -15.95481 -15.29862 -15.00193 -14.62875 -14.10179 -13.62371 -13.24010 -12.75710 -12.53469 -12.13572 -11.91743 -11.52614 -11.42108 -11.13468 -10.94158 -10.86449 -10.30454 -9.84071 -9.70981 -9.37843 -8.96490 -8.71880 -7.84295 -6.15370 -4.22289 3.24893 3.30858 3.33410 3.43802 3.80313 4.16163 4.39211 4.73965 4.95128 4.98597 5.20623 5.27519 5.39503 5.63172 5.70481 5.80311 5.83650 5.88232 5.96355 6.05477 6.27301 6.48194 7.33847 7.48370 7.54366 7.69066 7.99054 8.67127 8.80570 9.15764 9.44639 10.94937 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.078666 B = 0.006217 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.850992 B = 4502.672240 C = 4756.602453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 H 0.101 0.899 4 C -0.176 4.176 5 C -0.129 4.129 6 H 0.117 0.883 7 C -0.110 4.110 8 C 0.498 3.502 9 O -0.557 6.557 10 N -0.715 5.715 11 C 0.249 3.751 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.390 0.610 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 10.181 8.644 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 H 0.119 0.881 4 C -0.213 4.213 5 C -0.147 4.147 6 H 0.135 0.865 7 C -0.150 4.150 8 C 0.283 3.717 9 O -0.436 6.436 10 N -0.363 5.363 11 C 0.128 3.872 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.524 5.524 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.222 0.778 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.272 10.141 8.532 14.662 hybrid contribution -0.912 -0.832 -0.514 1.337 sum -7.184 9.309 8.018 14.232 Atomic orbital electron populations 1.21346 0.93092 1.01712 1.01787 1.22404 0.95228 0.94504 1.05716 0.88082 1.23150 1.02253 1.01254 0.94622 1.22155 1.01125 0.97954 0.93502 0.86481 1.21200 0.98060 0.96233 0.99552 1.20448 0.88944 0.81997 0.80273 1.90634 1.15269 1.73159 1.64548 1.46470 1.10936 1.30478 1.48457 1.19095 0.90449 0.87227 0.90453 1.21239 0.93438 1.13310 1.30153 0.91915 1.24960 0.95112 0.97684 0.96295 1.69979 1.09329 1.34497 1.38549 0.86410 0.80129 0.80511 0.79826 1.20458 1.21002 1.19756 0.92498 0.92516 0.92135 0.89028 0.88967 0.89502 0.89121 0.77759 0.95611 0.95603 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.16 -1.76 6.40 -90.62 -0.58 -2.35 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.18 -2.12 9.83 -26.69 -0.26 -2.38 16 5 C -0.13 -1.81 5.42 -90.58 -0.49 -2.30 16 6 H 0.12 1.91 7.31 -51.93 -0.38 1.53 16 7 C -0.11 -1.59 5.06 -27.88 -0.14 -1.73 16 8 C 0.50 10.15 7.83 -10.98 -0.09 10.06 16 9 O -0.56 -13.71 15.56 5.56 0.09 -13.62 16 10 N -0.72 -15.35 5.55 -61.47 -0.34 -15.69 16 11 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 12 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 13 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.54 7.84 -51.93 -0.41 0.14 16 23 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 25 H 0.09 1.09 7.88 -51.93 -0.41 0.69 16 26 H 0.09 1.13 7.77 -51.93 -0.40 0.73 16 27 H 0.39 7.11 8.32 -40.82 -0.34 6.77 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -31.82 260.72 -6.68 -38.50 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -4.41 Total: 2.95 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.66 Total: -6.36 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.40 Total: -41.35 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.82 -6.68 -38.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321653.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.686 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds