Wall clock time and date at job start Mon Mar 30 2020 02:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 5 5 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 6 6 H 1.08999 * 117.49959 * 144.99502 * 5 2 1 7 7 C 1.53008 * 117.49506 * 0.02562 * 5 2 1 8 8 C 1.50703 * 109.46682 * 174.99705 * 7 5 2 9 9 O 1.21279 * 120.00140 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99467 * 179.97438 * 8 7 5 11 11 C 1.46503 * 119.99579 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47005 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99975 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00097 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00026 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00184 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47312 * 90.00086 * 16 14 12 18 18 H 1.48505 * 109.46858 * 210.00227 * 16 14 12 19 19 H 1.48500 * 109.47043 * 329.99901 * 16 14 12 20 20 H 1.08997 * 109.47260 * 205.57907 * 1 2 3 21 21 H 1.09000 * 109.47658 * 325.58288 * 1 2 3 22 22 H 1.09001 * 109.47132 * 85.58115 * 1 2 3 23 23 H 1.09000 * 117.49996 * 215.00804 * 4 2 1 24 24 H 1.08999 * 117.49664 * 0.02562 * 4 2 1 25 25 H 1.08995 * 109.46873 * 295.00008 * 7 5 2 26 26 H 1.08998 * 109.47018 * 55.00518 * 7 5 2 27 27 H 0.96993 * 120.00649 * 0.02562 * 10 8 7 28 28 H 1.09002 * 109.47276 * 300.00346 * 11 10 8 29 29 H 1.09006 * 109.47061 * 60.00724 * 11 10 8 30 30 H 0.96999 * 120.00290 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7653 6 1 3.1713 -0.8746 -1.2689 7 6 1.3588 -2.1554 -1.4726 8 6 2.2301 -3.0958 -2.2647 9 8 3.4345 -2.9529 -2.2633 10 7 1.6710 -4.0963 -2.9739 11 6 2.5181 -5.0109 -3.7435 12 6 1.6537 -6.0299 -4.4402 13 1 0.5807 -5.9991 -4.3219 14 6 2.2327 -7.0016 -5.2286 15 7 3.5395 -7.0394 -5.3722 16 14 1.1612 -8.2642 -6.0928 17 1 0.7794 -7.7545 -7.4343 18 1 1.9158 -9.5345 -6.2422 19 1 -0.0634 -8.5076 -5.2888 20 1 -0.3633 -0.9269 0.4437 21 1 -0.3634 0.8477 0.5808 22 1 -0.3633 0.0792 -1.0246 23 1 3.1713 -0.8747 1.2690 24 1 1.6112 -1.8583 1.2685 25 1 0.7943 -2.7207 -0.7311 26 1 0.6679 -1.6469 -2.1451 27 1 0.7079 -4.2109 -2.9747 28 1 3.0827 -4.4459 -4.4852 29 1 3.2090 -5.5192 -3.0707 30 1 3.9469 -7.7228 -5.9272 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379321653.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:49 Heat of formation + Delta-G solvation = -57.745647 kcal Electronic energy + Delta-G solvation = -12049.622983 eV Core-core repulsion = 9843.936454 eV Total energy + Delta-G solvation = -2205.686529 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.68005 -38.58748 -36.11937 -34.35311 -31.22134 -29.34177 -28.46334 -24.75815 -22.52679 -21.58671 -20.22469 -18.99305 -17.68396 -17.02459 -16.61721 -16.24855 -15.69571 -14.73215 -14.52430 -14.32396 -14.01317 -13.71102 -13.36979 -12.93047 -12.84279 -12.69222 -12.38579 -12.23133 -12.06032 -11.49408 -10.85993 -10.81449 -10.76627 -10.55511 -9.82337 -8.29691 -6.46819 1.43155 1.45904 1.57201 1.79650 2.32375 2.57774 2.93894 3.05156 3.76830 3.87028 4.01611 4.11423 4.49110 4.56902 4.69782 4.78580 4.96438 5.03425 5.05968 5.13657 5.22766 5.27130 5.34982 5.48948 5.52498 5.70511 5.84560 6.64726 6.92991 7.23051 7.52184 8.82774 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.078666 B = 0.006217 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.850992 B = 4502.672240 C = 4756.602453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 H 0.109 0.891 4 C -0.177 4.177 5 C -0.161 4.161 6 H 0.084 0.916 7 C -0.091 4.091 8 C 0.492 3.508 9 O -0.606 6.606 10 N -0.709 5.709 11 C 0.264 3.736 12 C -0.557 4.557 13 H 0.085 0.915 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.987 3.013 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.254 1.254 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.409 0.591 28 H -0.015 1.015 29 H -0.015 1.015 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 10.426 9.242 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 H 0.127 0.873 4 C -0.214 4.214 5 C -0.180 4.180 6 H 0.102 0.898 7 C -0.130 4.130 8 C 0.281 3.719 9 O -0.489 6.489 10 N -0.359 5.359 11 C 0.141 3.859 12 C -0.594 4.594 13 H 0.103 0.897 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.810 3.190 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.178 1.178 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.109 0.891 24 H 0.122 0.878 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.245 0.755 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.320 10.416 9.155 16.708 hybrid contribution 0.096 -0.838 -0.658 1.070 sum -9.224 9.578 8.497 15.780 Atomic orbital electron populations 1.21417 0.91202 1.02874 1.02601 1.22517 0.96519 0.93886 1.02280 0.87274 1.23272 1.02858 1.02232 0.93063 1.22047 1.00841 1.00391 0.94733 0.89788 1.21167 0.97182 0.95046 0.99644 1.21608 0.89039 0.81791 0.79496 1.90613 1.18011 1.74253 1.65997 1.46229 1.11399 1.30107 1.48202 1.18541 0.90583 0.87556 0.89220 1.21634 0.94455 1.13261 1.30079 0.89684 1.26107 0.96496 1.00129 0.96980 1.70148 1.11783 1.35655 1.39561 0.85121 0.78323 0.76908 0.78636 1.19543 1.20971 1.17805 0.91849 0.90866 0.91547 0.89074 0.87776 0.86656 0.86360 0.75488 0.99694 0.99689 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.13 -2.59 6.40 -10.79 -0.07 -2.66 16 3 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.18 -3.95 9.83 30.62 0.30 -3.65 16 5 C -0.16 -4.38 5.42 -10.77 -0.06 -4.44 16 6 H 0.08 2.85 7.31 -2.39 -0.02 2.83 16 7 C -0.09 -2.45 5.06 29.85 0.15 -2.30 16 8 C 0.49 20.25 7.83 87.66 0.69 20.93 16 9 O -0.61 -31.29 15.56 -3.03 -0.05 -31.34 16 10 N -0.71 -30.60 5.55 -466.76 -2.59 -33.19 16 11 C 0.26 14.86 5.43 85.63 0.46 15.33 16 12 C -0.56 -30.66 9.28 25.60 0.24 -30.42 16 13 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 14 C 0.00 0.13 5.46 84.65 0.46 0.59 16 15 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 16 Si 0.99 42.49 29.54 68.60 2.03 44.51 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 20 H 0.06 0.86 7.90 -2.39 -0.02 0.84 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.92 7.84 -2.39 -0.02 0.90 16 23 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.10 2.06 7.94 -2.39 -0.02 2.04 16 25 H 0.12 2.50 7.88 -2.39 -0.02 2.48 16 26 H 0.12 2.56 7.77 -2.39 -0.02 2.54 16 27 H 0.41 14.31 8.32 -92.71 -0.77 13.53 16 28 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H -0.01 -0.94 8.14 -2.38 -0.02 -0.96 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -72.03 260.72 2.86 -69.18 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.35 Total: 15.37 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 2.84 Total: -7.76 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -2.30 Total: -89.96 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.05 Total: -31.34 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -72.03 2.86 -69.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321653.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.429 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds