Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47392 * 2 1 4 4 C 1.53001 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.08994 * 115.55853 * 29.31464 * 4 3 2 6 6 C 1.52996 * 117.49989 * 243.62577 * 4 3 2 7 7 C 1.52992 * 117.49610 * 175.00105 * 4 3 2 8 8 H 1.09006 * 117.51991 * 214.97410 * 7 4 3 9 9 C 1.50703 * 117.50293 * 0.02562 * 7 4 3 10 10 O 1.21293 * 119.99482 * 0.02562 * 9 7 4 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 7 4 12 12 C 1.37092 * 119.99729 * 180.27555 * 11 9 7 13 13 H 1.08002 * 120.00496 * 359.72414 * 12 11 9 14 14 C 1.38958 * 120.00096 * 179.72242 * 12 11 9 15 15 N 1.31414 * 119.99347 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00310 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47438 * 59.99738 * 16 14 12 18 18 H 1.48504 * 109.46883 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46866 * 299.99617 * 16 14 12 20 20 H 1.08999 * 109.47117 * 300.00269 * 1 2 3 21 21 H 1.09008 * 109.46739 * 59.99906 * 1 2 3 22 22 H 1.08994 * 109.47376 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47117 * 239.99731 * 2 1 3 24 24 H 1.09000 * 109.46880 * 120.00410 * 2 1 3 25 25 H 1.09006 * 109.46380 * 59.99850 * 3 2 1 26 26 H 1.08995 * 109.47044 * 299.99882 * 3 2 1 27 27 H 1.08994 * 117.50251 * 145.02535 * 6 4 3 28 28 H 1.09004 * 117.51807 * 359.97438 * 6 4 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 30 30 H 0.97004 * 119.99790 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0405 0.5849 -0.4804 6 6 4.2761 2.0454 1.2167 7 6 4.2766 2.7943 -0.1175 8 1 5.2120 2.8266 -0.6762 9 6 3.4123 4.0242 -0.2250 10 8 2.2040 3.9189 -0.2154 11 7 3.9819 5.2409 -0.3319 12 6 3.1956 6.3601 -0.4240 13 1 2.1197 6.2665 -0.4154 14 6 3.7828 7.6152 -0.5284 15 7 5.0919 7.7292 -0.5383 16 14 2.7114 9.1403 -0.6532 17 1 1.8554 9.2442 0.5558 18 1 3.5745 10.3445 -0.7543 19 1 1.8527 9.0445 -1.8610 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8901 26 1 1.6768 1.9563 -0.8900 27 1 5.2110 1.5848 1.5356 28 1 3.6508 2.4427 2.0163 29 1 4.9482 5.3251 -0.3392 30 1 5.5020 8.6053 -0.6116 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379329160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = -35.335107 kcal Electronic energy + Delta-G solvation = -12342.262669 eV Core-core repulsion = 10137.547934 eV Total energy + Delta-G solvation = -2204.714735 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.92103 -36.22516 -33.80224 -33.45193 -31.14442 -27.08193 -25.38612 -22.68949 -21.51468 -20.27749 -18.72760 -17.61518 -16.12655 -14.92185 -14.57600 -14.33973 -13.86237 -13.42644 -13.08410 -12.61769 -12.21345 -11.89169 -11.58921 -11.48027 -11.08357 -10.82624 -10.62011 -10.52705 -10.40766 -10.19841 -9.69193 -9.41195 -9.34134 -8.14810 -7.92871 -6.39532 -3.79721 3.20075 3.26629 3.31139 3.71113 4.18277 4.45836 4.90506 5.04767 5.25927 5.36789 5.47801 5.54675 5.61424 5.74789 5.89057 6.05819 6.11485 6.15449 6.30585 6.31935 6.39677 6.56477 6.59025 6.80891 7.15019 7.56773 8.09067 8.65116 9.20138 9.59495 10.11804 10.78223 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053671 B = 0.007981 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.568056 B = 3507.635697 C = 3933.564681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.075 4.075 4 C -0.123 4.123 5 H 0.099 0.901 6 C -0.162 4.162 7 C -0.172 4.172 8 H 0.107 0.893 9 C 0.468 3.532 10 O -0.590 6.590 11 N -0.558 5.558 12 C -0.301 4.301 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.274 1.274 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.393 0.607 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 -10.260 1.291 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.112 4.112 4 C -0.141 4.141 5 H 0.117 0.883 6 C -0.200 4.200 7 C -0.193 4.193 8 H 0.125 0.875 9 C 0.254 3.746 10 O -0.475 6.475 11 N -0.193 5.193 12 C -0.430 4.430 13 H 0.120 0.880 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.226 0.774 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.890 -10.119 1.275 10.373 hybrid contribution 0.356 0.942 -0.095 1.011 sum -1.535 -9.177 1.181 9.379 Atomic orbital electron populations 1.21739 0.96352 1.00559 1.02058 1.21625 0.95543 0.98208 1.00907 1.21180 0.91452 0.94149 1.04401 1.22282 0.96004 0.94619 1.01220 0.88252 1.22987 1.02219 1.03338 0.91414 1.22245 1.01386 0.93445 1.02246 0.87475 1.19038 0.87987 0.83519 0.84007 1.90496 1.14407 1.85974 1.56661 1.41855 1.09485 1.04693 1.63270 1.19680 0.92511 0.83615 1.47208 0.87971 1.25272 0.96053 0.99284 0.97339 1.69615 1.08916 1.25447 1.50259 0.85920 0.79207 0.80038 0.79055 1.19916 1.20955 1.19909 0.92838 0.92740 0.93545 0.92786 0.92779 0.91344 0.90131 0.89031 0.88718 0.77394 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.13 -1.70 5.89 -26.73 -0.16 -1.86 16 3 C -0.07 -1.29 3.76 -26.73 -0.10 -1.39 16 4 C -0.12 -2.00 5.74 -90.63 -0.52 -2.52 16 5 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 6 C -0.16 -2.61 9.88 -26.73 -0.26 -2.87 16 7 C -0.17 -3.24 6.19 -91.77 -0.57 -3.80 16 8 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 9 C 0.47 11.39 7.55 -10.98 -0.08 11.30 16 10 O -0.59 -15.80 12.68 5.55 0.07 -15.73 16 11 N -0.56 -14.62 5.29 -10.96 -0.06 -14.67 16 12 C -0.30 -8.53 9.68 -14.93 -0.14 -8.68 16 13 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 14 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 15 N -0.90 -24.96 13.05 55.50 0.72 -24.23 16 16 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.32 7.29 -51.93 -0.38 0.94 16 26 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.09 1.63 8.03 -51.93 -0.42 1.22 16 29 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 256.66 15.07 3.87 3.87 Total: -1.00 -29.82 256.66 -6.35 -36.17 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.37 Total: 9.17 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.56 Total: -10.85 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.67 Total: -38.91 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.07 Total: -15.73 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.82 -6.35 -36.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379329160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.838 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds