Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47392 * 2 1 4 4 C 1.53001 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.08994 * 115.55853 * 29.31464 * 4 3 2 6 6 C 1.52996 * 117.49989 * 243.62577 * 4 3 2 7 7 C 1.52992 * 117.49610 * 175.00105 * 4 3 2 8 8 H 1.09006 * 117.51991 * 214.97410 * 7 4 3 9 9 C 1.50703 * 117.50293 * 0.02562 * 7 4 3 10 10 O 1.21293 * 119.99482 * 0.02562 * 9 7 4 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 7 4 12 12 C 1.37092 * 119.99729 * 180.27555 * 11 9 7 13 13 H 1.08002 * 120.00496 * 359.72414 * 12 11 9 14 14 C 1.38958 * 120.00096 * 179.72242 * 12 11 9 15 15 N 1.31414 * 119.99347 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00310 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47438 * 59.99738 * 16 14 12 18 18 H 1.48504 * 109.46883 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46866 * 299.99617 * 16 14 12 20 20 H 1.08999 * 109.47117 * 300.00269 * 1 2 3 21 21 H 1.09008 * 109.46739 * 59.99906 * 1 2 3 22 22 H 1.08994 * 109.47376 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47117 * 239.99731 * 2 1 3 24 24 H 1.09000 * 109.46880 * 120.00410 * 2 1 3 25 25 H 1.09006 * 109.46380 * 59.99850 * 3 2 1 26 26 H 1.08995 * 109.47044 * 299.99882 * 3 2 1 27 27 H 1.08994 * 117.50251 * 145.02535 * 6 4 3 28 28 H 1.09004 * 117.51807 * 359.97438 * 6 4 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 30 30 H 0.97004 * 119.99790 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0405 0.5849 -0.4804 6 6 4.2761 2.0454 1.2167 7 6 4.2766 2.7943 -0.1175 8 1 5.2120 2.8266 -0.6762 9 6 3.4123 4.0242 -0.2250 10 8 2.2040 3.9189 -0.2154 11 7 3.9819 5.2409 -0.3319 12 6 3.1956 6.3601 -0.4240 13 1 2.1197 6.2665 -0.4154 14 6 3.7828 7.6152 -0.5284 15 7 5.0919 7.7292 -0.5383 16 14 2.7114 9.1403 -0.6532 17 1 1.8554 9.2442 0.5558 18 1 3.5745 10.3445 -0.7543 19 1 1.8527 9.0445 -1.8610 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8901 26 1 1.6768 1.9563 -0.8900 27 1 5.2110 1.5848 1.5356 28 1 3.6508 2.4427 2.0163 29 1 4.9482 5.3251 -0.3392 30 1 5.5020 8.6053 -0.6116 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379329160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = -54.074013 kcal Electronic energy + Delta-G solvation = -12343.075249 eV Core-core repulsion = 10137.547934 eV Total energy + Delta-G solvation = -2205.527315 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.65901 -37.86014 -35.82572 -34.68789 -33.21540 -28.43194 -27.29333 -24.39110 -22.69295 -21.62728 -20.61519 -19.60790 -17.83674 -16.59265 -16.23212 -15.87126 -15.54548 -15.07128 -14.82428 -13.93900 -13.69225 -13.52322 -13.17243 -12.97181 -12.86981 -12.45680 -12.17303 -12.00188 -11.85742 -11.64428 -11.53360 -10.91859 -10.78572 -10.07475 -10.00143 -8.48022 -5.96819 1.37428 1.39359 1.50981 1.94649 2.28407 2.89400 3.17333 3.31557 3.74203 4.09113 4.17682 4.28597 4.39081 4.42993 4.56691 4.69520 4.88997 4.98285 5.06778 5.07728 5.14645 5.22927 5.38740 5.43208 5.50327 5.75350 5.99543 6.58954 7.10832 7.56639 8.12634 8.69536 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053671 B = 0.007981 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.568056 B = 3507.635697 C = 3933.564681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.073 4.073 4 C -0.111 4.111 5 H 0.138 0.862 6 C -0.142 4.142 7 C -0.196 4.196 8 H 0.130 0.870 9 C 0.463 3.537 10 O -0.622 6.622 11 N -0.571 5.571 12 C -0.337 4.337 13 H 0.079 0.921 14 C -0.014 4.014 15 N -0.921 5.921 16 Si 0.995 3.005 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.271 1.271 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.133 0.867 28 H 0.076 0.924 29 H 0.395 0.605 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -11.531 1.457 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.110 4.110 4 C -0.129 4.129 5 H 0.156 0.844 6 C -0.179 4.179 7 C -0.217 4.217 8 H 0.148 0.852 9 C 0.251 3.749 10 O -0.510 6.510 11 N -0.207 5.207 12 C -0.467 4.467 13 H 0.097 0.903 14 C -0.214 4.214 15 N -0.562 5.562 16 Si 0.818 3.182 17 H -0.197 1.197 18 H -0.193 1.193 19 H -0.197 1.197 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.151 0.849 28 H 0.095 0.905 29 H 0.228 0.772 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.130 -11.405 1.445 11.551 hybrid contribution 0.095 1.285 -0.134 1.296 sum -1.035 -10.119 1.311 10.256 Atomic orbital electron populations 1.21760 0.96098 1.01936 1.01090 1.21564 0.95815 0.95465 1.02580 1.21063 0.92641 0.96215 1.01130 1.22503 0.95173 0.94040 1.01223 0.84382 1.23101 1.03520 1.01482 0.89827 1.22200 1.01935 0.91939 1.05653 0.85174 1.20073 0.88330 0.84627 0.81856 1.90480 1.16305 1.86743 1.57455 1.41946 1.09366 1.05025 1.64348 1.19673 0.91947 0.85352 1.49685 0.90298 1.26082 0.97440 1.01590 0.96240 1.69681 1.09993 1.26479 1.50052 0.84972 0.77701 0.76602 0.78944 1.19677 1.19288 1.19666 0.93753 0.93895 0.90921 0.91031 0.90957 0.94430 0.93759 0.84910 0.90512 0.77156 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -2.91 5.89 30.60 0.18 -2.73 16 3 C -0.07 -2.50 3.76 30.60 0.11 -2.39 16 4 C -0.11 -3.36 5.74 -10.80 -0.06 -3.42 16 5 H 0.14 3.18 8.07 -2.39 -0.02 3.16 16 6 C -0.14 -4.22 9.88 30.59 0.30 -3.92 16 7 C -0.20 -7.16 6.19 -11.54 -0.07 -7.23 16 8 H 0.13 4.13 8.14 -2.38 -0.02 4.12 16 9 C 0.46 23.09 7.55 87.66 0.66 23.75 16 10 O -0.62 -34.87 12.68 -3.07 -0.04 -34.91 16 11 N -0.57 -30.79 5.29 -306.98 -1.62 -32.41 16 12 C -0.34 -19.78 9.68 84.04 0.81 -18.96 16 13 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 14 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 15 N -0.92 -51.08 13.05 21.67 0.28 -50.80 16 16 Si 0.99 43.82 29.55 68.60 2.03 45.84 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.04 1.11 8.14 -2.38 -0.02 1.10 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.48 7.29 -2.38 -0.02 1.47 16 26 H 0.04 1.83 6.92 -2.39 -0.02 1.81 16 27 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.08 2.58 8.03 -2.38 -0.02 2.56 16 29 H 0.39 20.41 7.90 -92.71 -0.73 19.68 16 30 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -66.31 256.66 4.16 -62.15 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.39 Total: 28.29 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 3.12 Total: -18.16 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -1.34 Total: -83.21 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.04 Total: -34.91 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.31 4.16 -62.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379329160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.076 kcal (2) G-P(sol) polarization free energy of solvation -66.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds