Wall clock time and date at job start Mon Mar 30 2020 02:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99972 * 2 1 4 4 O 1.42902 * 109.47082 * 135.00783 * 3 2 1 5 5 N 1.46293 * 113.99936 * 184.97213 * 4 3 2 6 6 C 1.46905 * 111.00058 * 184.41817 * 5 4 3 7 7 C 1.53003 * 109.47441 * 185.47158 * 6 5 4 8 8 C 1.50696 * 115.54998 * 304.98966 * 7 6 5 9 9 H 1.08004 * 119.99922 * 274.70336 * 8 7 6 10 10 C 1.37878 * 120.00281 * 94.42613 * 8 7 6 11 11 N 1.31517 * 119.99862 * 180.30165 * 10 8 7 12 12 Si 1.86795 * 119.99989 * 0.30106 * 10 8 7 13 13 H 1.48501 * 109.46821 * 94.23998 * 12 10 8 14 14 H 1.48500 * 109.47081 * 214.23992 * 12 10 8 15 15 H 1.48504 * 109.47258 * 334.24095 * 12 10 8 16 16 C 1.52998 * 117.49568 * 90.65281 * 7 6 5 17 17 C 1.52996 * 117.49890 * 159.31405 * 7 6 5 18 18 H 1.08000 * 119.99903 * 359.97438 * 1 2 3 19 19 H 1.07993 * 120.00007 * 180.02562 * 1 2 3 20 20 H 1.08000 * 119.99903 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47211 * 15.00592 * 3 2 1 22 22 H 1.09005 * 109.46912 * 255.00235 * 3 2 1 23 23 H 1.00899 * 111.00659 * 308.37109 * 5 4 3 24 24 H 1.09005 * 109.46764 * 65.47199 * 6 5 4 25 25 H 1.08991 * 109.47165 * 305.47507 * 6 5 4 26 26 H 0.97006 * 119.99635 * 179.97438 * 11 10 8 27 27 H 1.09006 * 117.49823 * 215.00337 * 16 7 6 28 28 H 1.09002 * 117.49933 * 0.02693 * 16 7 6 29 29 H 1.08997 * 117.49929 * 359.97438 * 17 7 6 30 30 H 1.08997 * 117.49828 * 144.97953 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 7 3.8545 2.4996 1.1173 6 6 4.9942 2.3332 2.0292 7 6 5.6468 3.6936 2.2835 8 6 6.0743 4.4497 1.0521 9 1 7.0384 4.2547 0.6062 10 6 5.2322 5.3865 0.4913 11 7 5.6030 6.0421 -0.5868 12 14 3.5650 5.7244 1.2628 13 1 3.6746 6.8763 2.1936 14 1 2.5812 6.0414 0.1965 15 1 3.1137 4.5240 2.0117 16 6 5.1370 4.5103 3.4726 17 6 6.5112 3.8390 3.5375 18 1 -0.5400 0.9353 0.0004 19 1 -0.5400 -0.9352 0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3856 2.1161 0.2661 22 1 2.4755 1.4868 -0.9927 23 1 4.1552 2.8630 0.2254 24 1 5.7233 1.6588 1.5801 25 1 4.6459 1.9151 2.9735 26 1 5.0104 6.7009 -0.9816 27 1 5.1109 5.5946 3.3642 28 1 4.3370 4.0783 4.0739 29 1 6.6146 2.9658 4.1815 30 1 7.3893 4.4814 3.4717 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387255412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:10 Heat of formation + Delta-G solvation = 50.081951 kcal Electronic energy + Delta-G solvation = -12555.386782 eV Core-core repulsion = 10354.376009 eV Total energy + Delta-G solvation = -2201.010774 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.43772 -36.44893 -33.68043 -32.11195 -30.91124 -25.97137 -25.27280 -23.84545 -21.60912 -19.88343 -18.88497 -16.76578 -16.15211 -15.49800 -14.84700 -14.55826 -14.28532 -13.77520 -12.91394 -12.64488 -12.53761 -12.26545 -11.69100 -11.13124 -10.99201 -10.59255 -10.46728 -10.23189 -10.04711 -9.49680 -9.28557 -9.06330 -8.64105 -8.55472 -7.67145 -6.12662 -4.20477 2.17440 3.25073 3.45953 3.57147 3.77200 4.52282 4.91208 5.08295 5.18277 5.23383 5.57135 5.72687 5.76899 5.93937 5.95712 6.07063 6.17771 6.35395 6.43840 6.50738 6.56257 6.71988 6.74770 7.03910 7.11424 7.40046 7.72583 7.98845 8.45468 8.87811 9.49531 10.96995 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.034249 B = 0.011452 C = 0.009954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.348503 B = 2444.327893 C = 2812.314344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.141 4.141 3 C 0.085 3.915 4 O -0.272 6.272 5 N -0.483 5.483 6 C 0.091 3.909 7 C 0.006 3.994 8 C -0.502 4.502 9 H 0.076 0.924 10 C 0.079 3.921 11 N -0.897 5.897 12 Si 0.865 3.135 13 H -0.290 1.290 14 H -0.301 1.301 15 H -0.211 1.211 16 C -0.194 4.194 17 C -0.177 4.177 18 H 0.098 0.902 19 H 0.101 0.899 20 H 0.113 0.887 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.347 0.653 24 H 0.034 0.966 25 H 0.061 0.939 26 H 0.265 0.735 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 -8.083 2.758 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.160 4.160 3 C 0.007 3.993 4 O -0.278 6.278 5 N -0.158 5.158 6 C -0.039 4.039 7 C 0.004 3.996 8 C -0.540 4.540 9 H 0.094 0.906 10 C -0.124 4.124 11 N -0.533 5.533 12 Si 0.693 3.307 13 H -0.217 1.217 14 H -0.228 1.228 15 H -0.133 1.133 16 C -0.231 4.231 17 C -0.215 4.215 18 H 0.116 0.884 19 H 0.119 0.881 20 H 0.131 0.869 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.164 0.836 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.426 -7.927 3.213 11.327 hybrid contribution -0.180 0.116 -0.524 0.566 sum -7.605 -7.811 2.688 11.229 Atomic orbital electron populations 1.23794 0.95560 1.02022 1.01072 1.22781 0.95640 0.98177 0.99416 1.21368 0.89884 0.95365 0.92662 1.90689 1.45938 1.29628 1.61547 1.67302 1.27983 1.04223 1.16260 1.21753 0.89405 0.97728 0.95017 1.19253 0.97992 0.92538 0.89771 1.20302 1.04390 1.20673 1.08591 0.90585 1.25055 0.98456 0.94643 0.94248 1.69921 1.37388 1.25168 1.20859 0.87075 0.83670 0.80638 0.79363 1.21679 1.22833 1.13324 1.22944 0.96467 0.99162 1.04557 1.22901 0.94528 1.01831 1.02240 0.88370 0.88084 0.86943 0.92283 0.92792 0.83570 0.94727 0.92052 0.92544 0.89689 0.90455 0.90898 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 14.31 29.01 0.42 -1.71 16 2 C -0.14 -1.88 9.89 -36.03 -0.36 -2.24 16 3 C 0.08 1.39 6.76 36.01 0.24 1.63 16 4 O -0.27 -5.39 11.27 -13.92 -0.16 -5.55 16 5 N -0.48 -10.46 4.71 -10.37 -0.05 -10.51 16 6 C 0.09 1.94 6.14 -3.82 -0.02 1.91 16 7 C 0.01 0.14 1.37 -155.66 -0.21 -0.07 16 8 C -0.50 -13.67 8.73 -34.44 -0.30 -13.97 16 9 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 10 C 0.08 2.22 5.12 -17.82 -0.09 2.12 16 11 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 12 Si 0.87 21.36 23.18 -169.99 -3.94 17.42 16 13 H -0.29 -7.23 7.08 56.52 0.40 -6.83 16 14 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 15 H -0.21 -4.98 5.17 56.52 0.29 -4.69 16 16 C -0.19 -4.18 7.06 -26.69 -0.19 -4.37 16 17 C -0.18 -3.58 9.96 -26.69 -0.27 -3.85 16 18 H 0.10 1.07 7.90 -52.49 -0.41 0.65 16 19 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 20 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 21 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.35 7.85 7.40 -39.29 -0.29 7.56 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.08 1.94 6.32 -51.93 -0.33 1.61 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 252.57 15.07 3.81 3.81 Total: -1.00 -29.43 252.57 -4.84 -34.27 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.49 Total: 7.09 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -0.78 Total: -20.54 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.72 Total: -36.50 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.16 Total: -5.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -3.94 Total: 17.42 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.43 -4.84 -34.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387255412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.352 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds