Wall clock time and date at job start Mon Mar 30 2020 02:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99972 * 2 1 4 4 O 1.42902 * 109.47082 * 135.00783 * 3 2 1 5 5 N 1.46293 * 113.99936 * 184.97213 * 4 3 2 6 6 C 1.46905 * 111.00058 * 184.41817 * 5 4 3 7 7 C 1.53003 * 109.47441 * 185.47158 * 6 5 4 8 8 C 1.50696 * 115.54998 * 304.98966 * 7 6 5 9 9 H 1.08004 * 119.99922 * 274.70336 * 8 7 6 10 10 C 1.37878 * 120.00281 * 94.42613 * 8 7 6 11 11 N 1.31517 * 119.99862 * 180.30165 * 10 8 7 12 12 Si 1.86795 * 119.99989 * 0.30106 * 10 8 7 13 13 H 1.48501 * 109.46821 * 94.23998 * 12 10 8 14 14 H 1.48500 * 109.47081 * 214.23992 * 12 10 8 15 15 H 1.48504 * 109.47258 * 334.24095 * 12 10 8 16 16 C 1.52998 * 117.49568 * 90.65281 * 7 6 5 17 17 C 1.52996 * 117.49890 * 159.31405 * 7 6 5 18 18 H 1.08000 * 119.99903 * 359.97438 * 1 2 3 19 19 H 1.07993 * 120.00007 * 180.02562 * 1 2 3 20 20 H 1.08000 * 119.99903 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47211 * 15.00592 * 3 2 1 22 22 H 1.09005 * 109.46912 * 255.00235 * 3 2 1 23 23 H 1.00899 * 111.00659 * 308.37109 * 5 4 3 24 24 H 1.09005 * 109.46764 * 65.47199 * 6 5 4 25 25 H 1.08991 * 109.47165 * 305.47507 * 6 5 4 26 26 H 0.97006 * 119.99635 * 179.97438 * 11 10 8 27 27 H 1.09006 * 117.49823 * 215.00337 * 16 7 6 28 28 H 1.09002 * 117.49933 * 0.02693 * 16 7 6 29 29 H 1.08997 * 117.49929 * 359.97438 * 17 7 6 30 30 H 1.08997 * 117.49828 * 144.97953 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 7 3.8545 2.4996 1.1173 6 6 4.9942 2.3332 2.0292 7 6 5.6468 3.6936 2.2835 8 6 6.0743 4.4497 1.0521 9 1 7.0384 4.2547 0.6062 10 6 5.2322 5.3865 0.4913 11 7 5.6030 6.0421 -0.5868 12 14 3.5650 5.7244 1.2628 13 1 3.6746 6.8763 2.1936 14 1 2.5812 6.0414 0.1965 15 1 3.1137 4.5240 2.0117 16 6 5.1370 4.5103 3.4726 17 6 6.5112 3.8390 3.5375 18 1 -0.5400 0.9353 0.0004 19 1 -0.5400 -0.9352 0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3856 2.1161 0.2661 22 1 2.4755 1.4868 -0.9927 23 1 4.1552 2.8630 0.2254 24 1 5.7233 1.6588 1.5801 25 1 4.6459 1.9151 2.9735 26 1 5.0104 6.7009 -0.9816 27 1 5.1109 5.5946 3.3642 28 1 4.3370 4.0783 4.0739 29 1 6.6146 2.9658 4.1815 30 1 7.3893 4.4814 3.4717 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387255412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:10 Heat of formation + Delta-G solvation = 30.466432 kcal Electronic energy + Delta-G solvation = -12556.237375 eV Core-core repulsion = 10354.376009 eV Total energy + Delta-G solvation = -2201.861367 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13828 -37.90595 -34.88670 -34.25348 -32.42379 -27.86161 -26.74234 -25.48151 -23.27639 -21.01891 -20.65813 -18.52015 -17.90116 -16.94504 -16.60500 -16.02999 -15.73903 -15.45086 -14.69646 -14.36523 -13.88652 -13.81364 -13.28669 -13.00818 -12.65446 -12.08927 -12.02271 -11.81529 -11.76884 -11.37020 -10.95878 -10.66134 -10.44768 -10.27159 -9.34299 -8.30253 -6.40746 1.14643 1.39068 1.48243 1.77724 1.99847 2.45995 3.04993 3.26059 3.96687 4.03563 4.18057 4.33540 4.35141 4.45073 4.51008 4.63771 4.65858 4.80714 4.88978 4.99617 5.09649 5.32282 5.47924 5.61798 5.69334 5.74724 5.78222 6.27447 6.37064 6.70305 7.32446 8.83259 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.034249 B = 0.011452 C = 0.009954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.348503 B = 2444.327893 C = 2812.314344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.167 4.167 3 C 0.078 3.922 4 O -0.275 6.275 5 N -0.496 5.496 6 C 0.098 3.902 7 C -0.022 4.022 8 C -0.498 4.498 9 H 0.033 0.967 10 C 0.033 3.967 11 N -0.946 5.946 12 Si 0.926 3.074 13 H -0.291 1.291 14 H -0.308 1.308 15 H -0.191 1.191 16 C -0.190 4.190 17 C -0.157 4.157 18 H 0.102 0.898 19 H 0.129 0.871 20 H 0.120 0.880 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.335 0.665 24 H 0.030 0.970 25 H 0.082 0.918 26 H 0.265 0.735 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 -9.507 4.453 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.186 4.186 3 C 0.001 3.999 4 O -0.283 6.283 5 N -0.168 5.168 6 C -0.031 4.031 7 C -0.024 4.024 8 C -0.535 4.535 9 H 0.051 0.949 10 C -0.165 4.165 11 N -0.584 5.584 12 Si 0.752 3.248 13 H -0.218 1.218 14 H -0.237 1.237 15 H -0.112 1.112 16 C -0.227 4.227 17 C -0.194 4.194 18 H 0.121 0.879 19 H 0.147 0.853 20 H 0.138 0.862 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.151 0.849 24 H 0.049 0.951 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.199 -9.364 4.933 14.023 hybrid contribution 0.388 0.501 -1.095 1.266 sum -8.811 -8.863 3.837 13.073 Atomic orbital electron populations 1.24085 0.94793 1.03567 0.97375 1.22686 0.96276 0.96881 1.02762 1.21611 0.89157 0.97270 0.91892 1.90668 1.46688 1.28277 1.62658 1.67211 1.27979 1.05950 1.15631 1.21642 0.89276 0.96368 0.95847 1.19187 1.00779 0.93488 0.88911 1.20443 1.02465 1.20658 1.09982 0.94890 1.25767 1.01732 0.94560 0.94467 1.70048 1.38943 1.26616 1.22842 0.86164 0.79506 0.80862 0.78314 1.21828 1.23659 1.11182 1.22967 0.98107 0.98232 1.03388 1.22970 0.93650 1.02551 1.00263 0.87936 0.85331 0.86219 0.92544 0.92977 0.84902 0.95123 0.89956 0.92592 0.91230 0.87956 0.87244 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 14.31 67.78 0.97 -2.14 16 2 C -0.17 -4.09 9.89 25.64 0.25 -3.83 16 3 C 0.08 2.44 6.76 71.24 0.48 2.93 16 4 O -0.28 -10.47 11.27 -50.14 -0.56 -11.04 16 5 N -0.50 -20.82 4.71 -186.71 -0.88 -21.70 16 6 C 0.10 4.00 6.14 86.30 0.53 4.53 16 7 C -0.02 -0.99 1.37 -52.93 -0.07 -1.06 16 8 C -0.50 -27.59 8.73 25.60 0.22 -27.36 16 9 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 10 C 0.03 1.89 5.12 84.65 0.43 2.33 16 11 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 12 Si 0.93 44.41 23.18 68.60 1.59 46.00 16 13 H -0.29 -13.93 7.08 99.48 0.70 -13.22 16 14 H -0.31 -15.06 7.11 99.48 0.71 -14.36 16 15 H -0.19 -8.43 5.17 99.48 0.51 -7.92 16 16 C -0.19 -7.63 7.06 30.62 0.22 -7.42 16 17 C -0.16 -5.90 9.96 30.62 0.30 -5.60 16 18 H 0.10 1.90 7.90 -2.91 -0.02 1.87 16 19 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 20 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 21 H 0.06 1.77 7.86 -2.39 -0.02 1.76 16 22 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.33 15.18 7.40 -89.69 -0.66 14.52 16 24 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.08 3.01 8.09 -2.39 -0.02 2.99 16 26 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 27 H 0.07 3.02 6.32 -2.38 -0.02 3.01 16 28 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 29 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -63.53 252.57 4.03 -59.50 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.25 Total: 22.77 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.34 Total: -37.63 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -0.58 Total: -79.59 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.56 Total: -11.04 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.59 Total: 46.00 kcal Total: -63.53 4.03 -59.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387255412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.964 kcal (2) G-P(sol) polarization free energy of solvation -63.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds