Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.09004 * 115.55162 * 330.67004 * 3 2 1 5 5 C 1.52998 * 117.49740 * 116.37765 * 3 2 1 6 6 C 1.52996 * 117.49836 * 184.99933 * 3 2 1 7 7 H 1.09002 * 117.50209 * 145.00025 * 6 3 2 8 8 C 1.50709 * 117.49928 * 0.02562 * 6 3 2 9 9 O 1.21293 * 119.99850 * 359.71972 * 8 6 3 10 10 N 1.34768 * 119.99967 * 179.97438 * 8 6 3 11 11 C 1.46507 * 120.00361 * 0.02562 * 10 8 6 12 12 C 1.37103 * 120.00063 * 179.97438 * 10 8 6 13 13 H 1.08000 * 119.99825 * 21.61830 * 12 10 8 14 14 C 1.38947 * 120.00422 * 201.61614 * 12 10 8 15 15 N 1.31418 * 119.99884 * 15.83337 * 14 12 10 16 16 Si 1.86798 * 120.00159 * 195.83751 * 14 12 10 17 17 H 1.48505 * 109.46877 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47346 * 119.99510 * 16 14 12 19 19 H 1.48502 * 109.47310 * 239.99993 * 16 14 12 20 20 H 1.09008 * 109.47210 * 59.99862 * 1 2 3 21 21 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47226 * 299.99944 * 1 2 3 23 23 H 1.09004 * 109.47086 * 240.00386 * 2 1 3 24 24 H 1.08994 * 109.47175 * 119.99926 * 2 1 3 25 25 H 1.09002 * 117.49838 * 0.02562 * 5 3 2 26 26 H 1.08998 * 117.50116 * 214.97821 * 5 3 2 27 27 H 1.09006 * 109.46874 * 87.61403 * 11 10 8 28 28 H 1.08997 * 109.46793 * 207.60967 * 11 10 8 29 29 H 1.08991 * 109.46680 * 327.61561 * 11 10 8 30 30 H 0.96996 * 119.99618 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1716 -0.4817 5 6 2.8438 1.9076 1.2158 6 6 3.5500 1.6580 -0.1183 7 1 3.8919 2.5287 -0.6777 8 6 4.4213 0.4330 -0.2264 9 8 3.9196 -0.6712 -0.2126 10 7 5.7583 0.5645 -0.3334 11 6 6.3648 1.8980 -0.3440 12 6 6.5510 -0.5499 -0.4313 13 1 6.1290 -1.4848 -0.7693 14 6 7.8974 -0.4765 -0.0958 15 7 8.3466 0.5445 0.5992 16 14 9.0688 -1.8288 -0.6326 17 1 8.3198 -2.8575 -1.3981 18 1 10.1325 -1.2500 -1.4922 19 1 9.6856 -2.4538 0.5650 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.0098 1.1857 2.0155 26 1 2.7212 2.9427 1.5344 27 1 6.5613 2.2159 0.6800 28 1 7.3014 1.8667 -0.9007 29 1 5.6831 2.6034 -0.8190 30 1 9.2864 0.5955 0.8337 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387644649.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = -29.228865 kcal Electronic energy + Delta-G solvation = -12743.620071 eV Core-core repulsion = 10539.170122 eV Total energy + Delta-G solvation = -2204.449949 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.79180 -37.96372 -36.34147 -33.71315 -32.70946 -28.42569 -26.83362 -24.66329 -24.31469 -21.65746 -19.94852 -18.88297 -18.01722 -16.55703 -16.13173 -15.97884 -15.38708 -14.93942 -14.75926 -13.95606 -13.53836 -13.43715 -13.16784 -13.00410 -12.74506 -12.63943 -12.35833 -12.11962 -12.09081 -11.83690 -11.09549 -10.92172 -10.75496 -10.05967 -9.65671 -8.35568 -5.96926 1.33736 1.38918 1.53388 1.94463 2.26667 2.87275 3.06547 3.22509 3.77644 4.02220 4.11840 4.26790 4.41245 4.56164 4.66212 4.76952 4.84727 4.91857 4.99441 5.14402 5.24639 5.30725 5.35485 5.40929 5.44257 5.73840 6.10194 6.50010 7.18058 7.50079 8.08796 8.68048 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059187 B = 0.009508 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.967179 B = 2944.278681 C = 3283.913543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.112 4.112 4 H 0.141 0.859 5 C -0.142 4.142 6 C -0.194 4.194 7 H 0.135 0.865 8 C 0.462 3.538 9 O -0.623 6.623 10 N -0.465 5.465 11 C 0.125 3.875 12 C -0.346 4.346 13 H 0.070 0.930 14 C -0.004 4.004 15 N -0.897 5.897 16 Si 0.989 3.011 17 H -0.274 1.274 18 H -0.263 1.263 19 H -0.275 1.275 20 H 0.066 0.934 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.134 0.866 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 5.919 -1.051 9.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.130 4.130 4 H 0.158 0.842 5 C -0.180 4.180 6 C -0.215 4.215 7 H 0.153 0.847 8 C 0.252 3.748 9 O -0.510 6.510 10 N -0.184 5.184 11 C -0.018 4.018 12 C -0.474 4.474 13 H 0.087 0.913 14 C -0.206 4.206 15 N -0.535 5.535 16 Si 0.812 3.188 17 H -0.199 1.199 18 H -0.188 1.188 19 H -0.201 1.201 20 H 0.085 0.915 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.152 0.848 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.887 5.464 -0.974 9.644 hybrid contribution 1.112 -0.795 -0.059 1.368 sum -6.775 4.669 -1.032 8.293 Atomic orbital electron populations 1.21774 0.93866 1.01666 1.02489 1.20983 0.95830 0.94042 1.01004 1.22532 0.90672 0.98635 1.01186 0.84162 1.23061 1.01701 1.03346 0.89845 1.22250 0.95455 0.98301 1.05479 0.84729 1.20219 0.82869 0.90212 0.81515 1.90464 1.73874 1.29441 1.57261 1.43849 1.04915 1.06958 1.62640 1.21397 0.97230 0.82383 1.00799 1.19640 0.91644 0.91384 1.44698 0.91250 1.26082 0.98927 1.00556 0.95032 1.70105 1.16299 1.32226 1.34914 0.84955 0.77715 0.77831 0.78276 1.19904 1.18821 1.20081 0.91506 0.93058 0.91706 0.93724 0.94737 0.91071 0.84803 0.94119 0.92802 0.91388 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.87 71.98 0.71 -2.85 16 2 C -0.08 -2.87 4.47 30.59 0.14 -2.73 16 3 C -0.11 -3.47 5.74 -10.79 -0.06 -3.54 16 4 H 0.14 3.26 8.07 -2.39 -0.02 3.24 16 5 C -0.14 -4.43 9.88 30.59 0.30 -4.13 16 6 C -0.19 -7.22 5.29 -11.54 -0.06 -7.28 16 7 H 0.14 4.26 6.47 -2.39 -0.02 4.24 16 8 C 0.46 23.62 7.39 87.66 0.65 24.27 16 9 O -0.62 -36.00 12.79 -3.07 -0.04 -36.04 16 10 N -0.47 -25.19 3.02 -658.88 -1.99 -27.18 16 11 C 0.13 5.74 8.50 127.77 1.09 6.83 16 12 C -0.35 -20.48 9.28 84.04 0.78 -19.70 16 13 H 0.07 4.40 7.42 -2.91 -0.02 4.38 16 14 C 0.00 -0.24 4.99 84.92 0.42 0.18 16 15 N -0.90 -49.03 10.84 21.66 0.23 -48.80 16 16 Si 0.99 43.62 29.58 68.60 2.03 45.65 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 21 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.87 6.93 -2.39 -0.02 1.85 16 24 H 0.03 1.41 7.29 -2.39 -0.02 1.40 16 25 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 26 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.04 1.92 7.79 -2.38 -0.02 1.90 16 28 H 0.05 2.60 6.81 -2.39 -0.02 2.59 16 29 H 0.07 2.49 6.10 -2.39 -0.01 2.48 16 30 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -68.57 248.76 5.32 -63.26 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.11 Total: 12.07 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 3.97 Total: -8.96 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.75 Total: -75.98 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.04 Total: -36.04 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.57 5.32 -63.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387644649.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.027 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds