Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 H 1.09002 * 115.56324 * 29.31335 * 3 2 1 5 5 C 1.53001 * 117.49938 * 243.62223 * 3 2 1 6 6 C 1.53001 * 60.00107 * 252.51008 * 5 3 2 7 7 H 1.09001 * 117.50095 * 252.48506 * 6 5 3 8 8 C 1.50702 * 117.50034 * 107.48549 * 6 5 3 9 9 O 1.21289 * 120.00098 * 291.12228 * 8 6 5 10 10 N 1.34778 * 119.99582 * 111.39354 * 8 6 5 11 11 C 1.46505 * 120.00294 * 359.72424 * 10 8 6 12 12 C 1.37104 * 119.99838 * 179.72517 * 10 8 6 13 13 H 1.08006 * 119.99403 * 24.47841 * 12 10 8 14 14 C 1.38943 * 119.99862 * 204.47343 * 12 10 8 15 15 N 1.31407 * 120.00500 * 12.52911 * 14 12 10 16 16 Si 1.86806 * 119.99716 * 192.52565 * 14 12 10 17 17 H 1.48493 * 109.47171 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47089 * 120.00585 * 16 14 12 19 19 H 1.48499 * 109.46983 * 239.99890 * 16 14 12 20 20 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47246 * 300.00446 * 1 2 3 22 22 H 1.08997 * 109.46916 * 59.99658 * 1 2 3 23 23 H 1.08997 * 109.47269 * 240.00038 * 2 1 3 24 24 H 1.09000 * 109.46845 * 119.99577 * 2 1 3 25 25 H 1.09003 * 117.50209 * 145.02146 * 5 3 2 26 26 H 1.08998 * 117.49918 * 359.97438 * 5 3 2 27 27 H 1.09002 * 109.46876 * 85.77447 * 11 10 8 28 28 H 1.08994 * 109.46747 * 205.77329 * 11 10 8 29 29 H 1.09001 * 109.46892 * 325.77523 * 11 10 8 30 30 H 0.96998 * 120.00532 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 3.8924 2.5288 0.6773 8 6 4.4214 0.4330 0.2259 9 8 3.9189 -0.6709 0.2214 10 7 5.7585 0.5644 0.3327 11 6 6.3654 1.8978 0.3380 12 6 6.5507 -0.5498 0.4363 13 1 6.2035 -1.4969 0.0503 14 6 7.8000 -0.4604 1.0376 15 7 8.1248 0.6136 1.7216 16 14 9.0181 -1.8672 0.8739 17 1 8.4146 -2.9523 0.0595 18 1 10.2527 -1.3781 0.2092 19 1 9.3558 -2.3890 2.2226 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.7213 2.9428 -1.5344 26 1 3.0099 1.1858 -2.0155 27 1 6.3624 2.2943 1.3533 28 1 7.3917 1.8312 -0.0230 29 1 5.7937 2.5598 -0.3123 30 1 8.9968 0.6758 2.1417 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387644655.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = -30.939887 kcal Electronic energy + Delta-G solvation = -12737.934185 eV Core-core repulsion = 10533.410041 eV Total energy + Delta-G solvation = -2204.524144 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.79173 -37.95979 -36.33902 -33.70567 -32.70969 -28.40429 -26.83553 -24.66715 -24.28416 -21.66384 -19.96244 -18.89644 -17.91382 -16.72875 -16.07111 -15.83322 -15.47048 -14.93413 -14.76476 -13.83925 -13.75900 -13.30559 -13.11368 -12.99280 -12.74910 -12.62239 -12.42178 -12.15257 -12.10732 -11.83646 -11.07390 -10.96155 -10.74098 -10.05261 -9.64067 -8.34596 -5.99492 1.34265 1.38761 1.53201 1.93950 2.27094 2.87671 3.08318 3.20562 3.77262 4.00606 4.11885 4.34484 4.43337 4.59460 4.67405 4.72339 4.83549 4.92351 5.02066 5.10367 5.24803 5.30362 5.35508 5.40759 5.43462 5.73445 6.11612 6.50860 7.18270 7.50007 8.08802 8.69113 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058503 B = 0.009455 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.495656 B = 2960.713958 C = 3277.751502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.114 4.114 4 H 0.138 0.862 5 C -0.137 4.137 6 C -0.195 4.195 7 H 0.128 0.872 8 C 0.464 3.536 9 O -0.621 6.621 10 N -0.467 5.467 11 C 0.126 3.874 12 C -0.343 4.343 13 H 0.069 0.931 14 C -0.005 4.005 15 N -0.899 5.899 16 Si 0.990 3.010 17 H -0.274 1.274 18 H -0.264 1.264 19 H -0.275 1.275 20 H 0.051 0.949 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.135 0.865 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 5.645 -3.621 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.133 4.133 4 H 0.155 0.845 5 C -0.174 4.174 6 C -0.217 4.217 7 H 0.146 0.854 8 C 0.254 3.746 9 O -0.509 6.509 10 N -0.185 5.185 11 C -0.017 4.017 12 C -0.471 4.471 13 H 0.087 0.913 14 C -0.207 4.207 15 N -0.538 5.538 16 Si 0.813 3.187 17 H -0.199 1.199 18 H -0.188 1.188 19 H -0.201 1.201 20 H 0.070 0.930 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.153 0.847 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.547 5.195 -3.516 9.814 hybrid contribution 1.083 -0.780 0.254 1.358 sum -6.464 4.416 -3.262 8.481 Atomic orbital electron populations 1.21772 0.93888 1.01673 1.02469 1.20981 0.95822 0.94001 1.01037 1.22526 0.90545 0.98658 1.01548 0.84476 1.23102 1.01161 1.03555 0.89624 1.22227 0.95511 0.98175 1.05743 0.85415 1.20253 0.82461 0.90188 0.81699 1.90463 1.73603 1.29463 1.57354 1.43829 1.04713 1.07026 1.62969 1.21354 0.97859 0.82553 0.99928 1.19633 0.98789 0.90389 1.38332 0.91338 1.26114 0.99758 1.00685 0.94109 1.70071 1.22635 1.29604 1.31512 0.84934 0.77776 0.77757 0.78194 1.19886 1.18845 1.20079 0.93029 0.91771 0.91495 0.94308 0.94065 0.84677 0.90360 0.94228 0.92648 0.91622 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.87 71.98 0.71 -2.86 16 2 C -0.08 -2.86 4.47 30.59 0.14 -2.72 16 3 C -0.11 -3.56 5.74 -10.79 -0.06 -3.62 16 4 H 0.14 3.29 8.08 -2.39 -0.02 3.27 16 5 C -0.14 -4.04 9.88 30.60 0.30 -3.73 16 6 C -0.20 -7.30 4.82 -11.54 -0.06 -7.36 16 7 H 0.13 4.27 7.35 -2.39 -0.02 4.25 16 8 C 0.46 23.76 7.39 87.66 0.65 24.41 16 9 O -0.62 -35.89 12.82 -3.06 -0.04 -35.93 16 10 N -0.47 -25.31 3.01 -658.88 -1.98 -27.30 16 11 C 0.13 5.82 8.17 127.77 1.04 6.86 16 12 C -0.34 -20.35 9.24 84.04 0.78 -19.57 16 13 H 0.07 4.33 7.45 -2.91 -0.02 4.31 16 14 C -0.01 -0.30 5.05 84.93 0.43 0.13 16 15 N -0.90 -49.30 10.83 21.66 0.23 -49.06 16 16 Si 0.99 43.74 29.57 68.60 2.03 45.77 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.04 1.55 7.30 -2.39 -0.02 1.53 16 24 H 0.04 1.76 6.91 -2.39 -0.02 1.74 16 25 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 26 H 0.08 2.57 8.03 -2.39 -0.02 2.55 16 27 H 0.04 1.86 7.83 -2.39 -0.02 1.84 16 28 H 0.05 2.70 6.80 -2.39 -0.02 2.68 16 29 H 0.07 2.45 6.90 -2.39 -0.02 2.44 16 30 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -68.43 249.69 5.28 -63.16 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.11 Total: 11.84 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 3.93 Total: -8.47 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.75 Total: -76.36 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.04 Total: -35.93 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.43 5.28 -63.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387644655.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.216 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds