Wall clock time and date at job start Mon Mar 30 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47506 * 2 1 4 4 H 1.09007 * 115.56146 * 330.68714 * 3 2 1 5 5 C 1.53000 * 117.50500 * 116.37443 * 3 2 1 6 6 C 1.52998 * 60.00094 * 107.49372 * 5 3 2 7 7 H 1.08999 * 117.51340 * 252.52555 * 6 5 3 8 8 C 1.50693 * 117.50117 * 107.49404 * 6 5 3 9 9 O 1.21298 * 119.99819 * 291.38214 * 8 6 5 10 10 N 1.34775 * 120.00054 * 111.37630 * 8 6 5 11 11 C 1.46500 * 119.99995 * 0.02562 * 10 8 6 12 12 C 1.37102 * 119.99780 * 180.02562 * 10 8 6 13 13 H 1.08004 * 120.00351 * 332.31198 * 12 10 8 14 14 C 1.38952 * 119.99949 * 152.32224 * 12 10 8 15 15 N 1.31407 * 119.99705 * 330.78465 * 14 12 10 16 16 Si 1.86800 * 120.00037 * 150.79351 * 14 12 10 17 17 H 1.48498 * 109.46829 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.46838 * 299.99315 * 16 14 12 19 19 H 1.48499 * 109.47494 * 59.99519 * 16 14 12 20 20 H 1.09005 * 109.47041 * 60.00297 * 1 2 3 21 21 H 1.08997 * 109.47650 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47601 * 300.00186 * 1 2 3 23 23 H 1.08991 * 109.47113 * 239.99379 * 2 1 3 24 24 H 1.09005 * 109.47041 * 119.99703 * 2 1 3 25 25 H 1.09005 * 117.49715 * 359.97438 * 5 3 2 26 26 H 1.08996 * 117.49948 * 214.98687 * 5 3 2 27 27 H 1.08998 * 109.46815 * 275.32578 * 11 10 8 28 28 H 1.08991 * 109.46906 * 35.32633 * 11 10 8 29 29 H 1.08999 * 109.46778 * 155.32906 * 11 10 8 30 30 H 0.97001 * 120.00790 * 353.69984 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1717 -0.4814 5 6 2.8440 1.9076 1.2158 6 6 3.5502 1.6578 -0.1183 7 1 4.1802 0.7718 -0.1964 8 6 4.0229 2.8618 -0.8914 9 8 3.2158 3.6166 -1.3916 10 7 5.3425 3.1000 -1.0271 11 6 6.3173 2.1881 -0.4235 12 6 5.7725 4.1957 -1.7301 13 1 5.1607 4.6043 -2.5208 14 6 6.9957 4.7804 -1.4256 15 7 7.4684 4.7151 -0.2012 16 14 7.9680 5.6593 -2.7565 17 1 9.2277 6.1926 -2.1787 18 1 8.2887 4.7043 -3.8476 19 1 7.1604 6.7801 -3.3012 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.0092 1.1860 2.0160 26 1 2.7212 2.9427 1.5343 27 1 6.4758 2.4641 0.6190 28 1 5.9402 1.1668 -0.4757 29 1 7.2611 2.2551 -0.9646 30 1 6.9247 4.3403 0.5094 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387644656.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:34 Heat of formation + Delta-G solvation = -40.513996 kcal Electronic energy + Delta-G solvation = -12575.189253 eV Core-core repulsion = 10370.249944 eV Total energy + Delta-G solvation = -2204.939309 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86622 -38.21924 -36.76322 -33.67376 -32.77836 -28.44527 -26.87443 -24.82115 -24.27128 -21.52235 -20.51226 -19.35095 -18.04385 -16.88379 -16.25201 -15.65869 -15.62763 -15.26707 -14.94715 -13.93817 -13.67334 -13.54066 -13.30195 -12.98840 -12.97274 -12.63354 -12.16400 -12.03425 -11.92416 -11.90707 -11.19400 -10.98827 -10.85981 -10.37521 -9.90652 -8.83174 -6.10695 1.46747 1.52867 1.82003 1.84122 2.36539 2.71309 2.96532 3.03961 3.71604 3.82630 3.94067 4.14241 4.25984 4.44666 4.48723 4.57446 4.64180 4.73471 4.82446 4.91247 5.00957 5.13917 5.24581 5.29727 5.50254 5.75158 5.85683 6.57865 6.86154 7.35593 7.88505 8.41745 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.075634 B = 0.008244 C = 0.007890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.115252 B = 3395.692814 C = 3548.111144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.119 4.119 4 H 0.081 0.919 5 C -0.138 4.138 6 C -0.188 4.188 7 H 0.139 0.861 8 C 0.461 3.539 9 O -0.636 6.636 10 N -0.468 5.468 11 C 0.093 3.907 12 C -0.441 4.441 13 H 0.053 0.947 14 C -0.020 4.020 15 N -0.881 5.881 16 Si 1.122 2.878 17 H -0.271 1.271 18 H -0.266 1.266 19 H -0.279 1.279 20 H 0.043 0.957 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.138 0.862 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 -10.807 2.949 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.138 4.138 4 H 0.100 0.900 5 C -0.176 4.176 6 C -0.209 4.209 7 H 0.157 0.843 8 C 0.252 3.748 9 O -0.524 6.524 10 N -0.187 5.187 11 C -0.050 4.050 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.224 4.224 15 N -0.515 5.515 16 Si 0.942 3.058 17 H -0.195 1.195 18 H -0.191 1.191 19 H -0.204 1.204 20 H 0.062 0.938 21 H 0.093 0.907 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.156 0.844 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.864 -9.685 2.424 10.705 hybrid contribution -1.422 -0.223 0.270 1.465 sum -5.286 -9.908 2.694 11.549 Atomic orbital electron populations 1.21735 0.94506 1.02508 1.01695 1.21148 0.96767 0.91302 1.03044 1.22460 0.90788 0.99711 1.00860 0.90029 1.23113 1.01403 1.02429 0.90611 1.22251 0.98089 0.98053 1.02529 0.84327 1.20401 0.82394 0.88164 0.83836 1.90450 1.54749 1.52874 1.54329 1.43829 1.04701 1.22716 1.47458 1.21718 0.92784 0.93081 0.97428 1.20308 1.08041 1.11378 1.17060 0.92859 1.27797 0.96588 0.96746 1.01277 1.70872 1.41528 1.39051 1.00027 0.82853 0.74939 0.75737 0.72312 1.19520 1.19077 1.20436 0.93760 0.90654 0.92375 0.91437 0.89506 0.84401 0.91082 0.93732 0.89410 0.92457 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.87 71.98 0.71 -2.19 16 2 C -0.09 -1.92 6.22 30.59 0.19 -1.73 16 3 C -0.12 -3.84 5.25 -10.80 -0.06 -3.89 16 4 H 0.08 3.16 7.60 -2.38 -0.02 3.14 16 5 C -0.14 -4.31 9.88 30.59 0.30 -4.01 16 6 C -0.19 -7.02 5.02 -11.54 -0.06 -7.08 16 7 H 0.14 4.29 6.52 -2.39 -0.02 4.27 16 8 C 0.46 24.16 7.41 87.66 0.65 24.81 16 9 O -0.64 -39.15 16.01 -3.09 -0.05 -39.20 16 10 N -0.47 -25.26 2.84 -658.90 -1.87 -27.13 16 11 C 0.09 4.03 8.48 127.77 1.08 5.11 16 12 C -0.44 -26.51 8.98 84.04 0.75 -25.75 16 13 H 0.05 3.50 7.63 -2.91 -0.02 3.48 16 14 C -0.02 -1.13 4.61 84.93 0.39 -0.74 16 15 N -0.88 -50.17 12.80 21.66 0.28 -49.89 16 16 Si 1.12 48.77 30.01 68.60 2.06 50.83 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.55 7.88 -2.38 -0.02 1.54 16 25 H 0.14 3.11 8.03 -2.38 -0.02 3.10 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.04 1.90 7.06 -2.39 -0.02 1.89 16 28 H 0.09 2.99 6.24 -2.39 -0.01 2.98 16 29 H 0.06 2.59 7.36 -2.39 -0.02 2.58 16 30 H 0.26 15.29 6.65 -92.71 -0.62 14.67 16 Total: -1.00 -73.43 254.35 5.65 -67.78 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.26 Total: 13.07 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.97 Total: -15.47 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.59 Total: -77.01 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.05 Total: -39.20 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.06 Total: 50.83 kcal Total: -73.43 5.65 -67.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387644656.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.269 kcal (2) G-P(sol) polarization free energy of solvation -73.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds