Wall clock time and date at job start Mon Mar 30 2020 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 H 1.08990 * 115.56269 * 29.30595 * 3 2 1 5 5 C 1.53080 * 117.51119 * 243.60107 * 3 2 1 6 6 C 1.52998 * 59.98563 * 252.52538 * 5 3 2 7 7 H 1.09004 * 117.49642 * 252.50620 * 6 5 3 8 8 C 1.52996 * 117.49991 * 107.49944 * 6 5 3 9 9 N 1.46504 * 109.46681 * 116.25105 * 8 6 5 10 10 C 1.34777 * 119.99854 * 179.97438 * 9 8 6 11 11 O 1.21693 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.46377 * 120.00307 * 180.27510 * 10 9 8 13 13 H 1.08001 * 119.99387 * 359.73219 * 12 10 9 14 14 C 1.40043 * 120.00458 * 179.72666 * 12 10 9 15 15 N 1.30674 * 120.00000 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00093 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47199 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46966 * 119.99861 * 16 14 12 19 19 H 1.48498 * 109.47127 * 239.99959 * 16 14 12 20 20 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47323 * 300.00651 * 1 2 3 22 22 H 1.09002 * 109.46622 * 60.00808 * 1 2 3 23 23 H 1.08994 * 109.47323 * 239.99348 * 2 1 3 24 24 H 1.09006 * 109.46436 * 119.99679 * 2 1 3 25 25 H 1.08995 * 117.48882 * 145.03511 * 5 3 2 26 26 H 1.09001 * 117.51261 * 0.02562 * 5 3 2 27 27 H 1.08998 * 109.47328 * 356.25437 * 8 6 5 28 28 H 1.08997 * 109.47540 * 236.25184 * 8 6 5 29 29 H 0.97000 * 120.00410 * 0.02562 * 9 8 6 30 30 H 0.97004 * 120.00230 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8448 1.9080 -1.2161 6 6 3.5502 1.6579 0.1183 7 1 3.8920 2.5287 0.6779 8 6 4.4346 0.4143 0.2277 9 7 5.8244 0.8215 0.4492 10 6 6.7878 -0.1122 0.5778 11 8 6.5034 -1.2934 0.5094 12 6 8.1755 0.2944 0.8051 13 1 8.4279 1.3428 0.8655 14 6 9.1757 -0.6758 0.9444 15 7 8.8703 -1.9443 0.8709 16 14 10.9464 -0.1568 1.2352 17 1 11.0271 1.3253 1.2780 18 1 11.4201 -0.7154 2.5272 19 1 11.7995 -0.6679 0.1325 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 2.7222 2.9432 -1.5343 26 1 3.0106 1.1866 -2.0163 27 1 4.3675 -0.1617 -0.6952 28 1 4.0980 -0.1987 1.0638 29 1 6.0511 1.7630 0.5042 30 1 9.5630 -2.6164 0.9677 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388081143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:03 Heat of formation + Delta-G solvation = -35.743635 kcal Electronic energy + Delta-G solvation = -12144.295228 eV Core-core repulsion = 9939.562778 eV Total energy + Delta-G solvation = -2204.732451 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.39975 -36.77720 -33.09198 -32.27066 -31.50523 -27.19970 -24.98227 -23.84219 -21.21782 -19.71152 -19.31620 -16.98372 -15.62816 -15.27850 -14.39821 -14.27691 -13.79128 -13.63277 -13.38795 -12.40369 -12.15368 -12.04977 -11.48476 -11.31254 -11.15899 -11.02602 -10.94367 -10.63454 -10.42350 -10.16625 -9.67989 -9.60744 -8.82168 -7.56469 -7.41775 -6.14903 -4.60025 3.15280 3.23165 3.27904 3.91424 4.14599 4.63078 4.75716 4.80524 5.05965 5.23182 5.32837 5.42619 5.59064 5.70756 5.83259 5.85648 5.98441 6.05246 6.10530 6.21177 6.23927 6.47583 6.57290 6.69791 7.47070 7.98950 8.17061 8.38335 9.06327 9.59983 10.64420 10.83370 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079709 B = 0.006673 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.192562 B = 4195.248041 C = 4444.443842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.146 4.146 4 H 0.101 0.899 5 C -0.176 4.176 6 C -0.155 4.155 7 H 0.104 0.896 8 C 0.165 3.835 9 N -0.766 5.766 10 C 0.553 3.447 11 O -0.583 6.583 12 C -0.546 4.546 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.769 5.769 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.380 0.620 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 6.984 -1.533 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.165 4.165 4 H 0.119 0.881 5 C -0.213 4.213 6 C -0.174 4.174 7 H 0.122 0.878 8 C 0.040 3.960 9 N -0.422 5.422 10 C 0.357 3.643 11 O -0.466 6.466 12 C -0.583 4.583 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.398 5.398 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.211 0.789 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.513 5.893 -1.583 12.155 hybrid contribution 0.969 0.810 0.153 1.272 sum -9.543 6.702 -1.430 11.749 Atomic orbital electron populations 1.21738 0.95864 1.01359 1.01447 1.21120 0.95376 0.94363 1.02676 1.22416 0.93449 0.98013 1.02636 0.88122 1.23175 1.04610 1.01808 0.91747 1.22657 0.93553 1.00673 1.00483 0.87781 1.20385 0.82746 0.92892 0.99995 1.46123 1.05935 1.09334 1.80811 1.18238 0.85057 0.84423 0.76573 1.90593 1.83010 1.17497 1.55462 1.20933 0.90909 0.93762 1.52682 0.91405 1.25712 1.00290 0.94405 0.92818 1.70040 1.33566 1.00590 1.35644 0.86324 0.82550 0.79607 0.78299 1.18793 1.20182 1.20179 0.92856 0.92936 0.92918 0.91628 0.91238 0.89260 0.88759 0.93388 0.93100 0.78881 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.87 37.16 0.37 -1.14 16 2 C -0.10 -1.24 5.30 -26.73 -0.14 -1.38 16 3 C -0.15 -1.87 5.74 -90.58 -0.52 -2.39 16 4 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 5 C -0.18 -2.31 9.83 -26.69 -0.26 -2.57 16 6 C -0.16 -2.35 5.84 -90.62 -0.53 -2.88 16 7 H 0.10 1.48 8.04 -51.93 -0.42 1.07 16 8 C 0.16 3.31 5.03 -4.04 -0.02 3.29 16 9 N -0.77 -17.86 5.55 -61.72 -0.34 -18.21 16 10 C 0.55 16.28 7.75 -12.99 -0.10 16.18 16 11 O -0.58 -19.44 15.02 5.20 0.08 -19.37 16 12 C -0.55 -15.80 9.54 -35.63 -0.34 -16.14 16 13 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 14 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 15 N -0.77 -23.56 11.83 55.55 0.66 -22.90 16 16 Si 0.91 20.44 29.56 -169.99 -5.02 15.41 16 17 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16 24 H 0.07 0.96 7.60 -51.93 -0.39 0.56 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 27 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 28 H 0.05 1.09 7.60 -51.93 -0.39 0.69 16 29 H 0.38 7.76 8.38 -40.82 -0.34 7.42 16 30 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 259.76 15.07 3.91 3.91 Total: -1.00 -34.02 259.76 -6.80 -40.82 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.43 Total: 4.98 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.64 Total: -4.65 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.31 Total: -41.11 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.08 Total: -19.37 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.02 -6.80 -40.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388081143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.074 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds