Wall clock time and date at job start Mon Mar 30 2020 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 H 1.08990 * 115.56269 * 29.30595 * 3 2 1 5 5 C 1.53080 * 117.51119 * 243.60107 * 3 2 1 6 6 C 1.52998 * 59.98563 * 252.52538 * 5 3 2 7 7 H 1.09004 * 117.49642 * 252.50620 * 6 5 3 8 8 C 1.52996 * 117.49991 * 107.49944 * 6 5 3 9 9 N 1.46504 * 109.46681 * 116.25105 * 8 6 5 10 10 C 1.34777 * 119.99854 * 179.97438 * 9 8 6 11 11 O 1.21693 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.46377 * 120.00307 * 180.27510 * 10 9 8 13 13 H 1.08001 * 119.99387 * 359.73219 * 12 10 9 14 14 C 1.40043 * 120.00458 * 179.72666 * 12 10 9 15 15 N 1.30674 * 120.00000 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00093 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47199 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46966 * 119.99861 * 16 14 12 19 19 H 1.48498 * 109.47127 * 239.99959 * 16 14 12 20 20 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47323 * 300.00651 * 1 2 3 22 22 H 1.09002 * 109.46622 * 60.00808 * 1 2 3 23 23 H 1.08994 * 109.47323 * 239.99348 * 2 1 3 24 24 H 1.09006 * 109.46436 * 119.99679 * 2 1 3 25 25 H 1.08995 * 117.48882 * 145.03511 * 5 3 2 26 26 H 1.09001 * 117.51261 * 0.02562 * 5 3 2 27 27 H 1.08998 * 109.47328 * 356.25437 * 8 6 5 28 28 H 1.08997 * 109.47540 * 236.25184 * 8 6 5 29 29 H 0.97000 * 120.00410 * 0.02562 * 9 8 6 30 30 H 0.97004 * 120.00230 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8448 1.9080 -1.2161 6 6 3.5502 1.6579 0.1183 7 1 3.8920 2.5287 0.6779 8 6 4.4346 0.4143 0.2277 9 7 5.8244 0.8215 0.4492 10 6 6.7878 -0.1122 0.5778 11 8 6.5034 -1.2934 0.5094 12 6 8.1755 0.2944 0.8051 13 1 8.4279 1.3428 0.8655 14 6 9.1757 -0.6758 0.9444 15 7 8.8703 -1.9443 0.8709 16 14 10.9464 -0.1568 1.2352 17 1 11.0271 1.3253 1.2780 18 1 11.4201 -0.7154 2.5272 19 1 11.7995 -0.6679 0.1325 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 2.7222 2.9432 -1.5343 26 1 3.0106 1.1866 -2.0163 27 1 4.3675 -0.1617 -0.6952 28 1 4.0980 -0.1987 1.0638 29 1 6.0511 1.7630 0.5042 30 1 9.5630 -2.6164 0.9677 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388081143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:03 Heat of formation + Delta-G solvation = -59.645803 kcal Electronic energy + Delta-G solvation = -12145.331704 eV Core-core repulsion = 9939.562778 eV Total energy + Delta-G solvation = -2205.768926 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87871 -38.67750 -35.02505 -34.33647 -32.73208 -29.21512 -26.86510 -24.78884 -22.39084 -21.80237 -20.65569 -18.98339 -17.45361 -16.90214 -15.96367 -15.88137 -15.36722 -15.02626 -14.91327 -14.24190 -13.74380 -13.26808 -13.09631 -12.86613 -12.72421 -12.65487 -12.34438 -12.15221 -11.96959 -11.75443 -10.97814 -10.82847 -10.78683 -9.87634 -9.47534 -8.30351 -6.87364 1.40349 1.40751 1.59186 2.24703 2.45552 2.75749 3.18918 3.60013 3.68917 3.93392 4.00180 4.28562 4.37807 4.47265 4.58614 4.80364 4.83665 4.88172 4.95448 5.18598 5.20746 5.27018 5.28633 5.31214 5.50732 5.86499 6.23281 6.27241 6.85343 7.54677 8.47629 8.66332 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079709 B = 0.006673 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.192562 B = 4195.248041 C = 4444.443842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.129 4.129 4 H 0.128 0.872 5 C -0.165 4.165 6 C -0.172 4.172 7 H 0.120 0.880 8 C 0.170 3.830 9 N -0.754 5.754 10 C 0.533 3.467 11 O -0.636 6.636 12 C -0.574 4.574 13 H 0.089 0.911 14 C 0.026 3.974 15 N -0.824 5.824 16 Si 1.002 2.998 17 H -0.246 1.246 18 H -0.268 1.268 19 H -0.268 1.268 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.027 0.973 28 H 0.029 0.971 29 H 0.396 0.604 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.256 9.285 -1.479 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.148 4.148 4 H 0.146 0.854 5 C -0.201 4.201 6 C -0.191 4.191 7 H 0.138 0.862 8 C 0.046 3.954 9 N -0.408 5.408 10 C 0.337 3.663 11 O -0.523 6.523 12 C -0.610 4.610 13 H 0.107 0.893 14 C -0.188 4.188 15 N -0.454 5.454 16 Si 0.821 3.179 17 H -0.169 1.169 18 H -0.193 1.193 19 H -0.193 1.193 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.230 0.770 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.456 8.254 -1.534 13.409 hybrid contribution 0.865 0.070 0.118 0.876 sum -9.592 8.324 -1.417 12.779 Atomic orbital electron populations 1.21693 0.93501 1.02036 1.02556 1.21160 0.97494 0.94354 1.01148 1.22552 0.91795 0.98380 1.02031 0.85404 1.23254 1.03018 1.03144 0.90716 1.22472 0.94477 0.98770 1.03336 0.86242 1.20362 0.81912 0.95201 0.97972 1.45824 1.06501 1.09316 1.79188 1.18713 0.86666 0.84477 0.76422 1.90544 1.84065 1.19809 1.57914 1.21487 0.91274 0.95189 1.53067 0.89266 1.27040 1.06293 0.93995 0.91494 1.70208 1.36075 1.02524 1.36603 0.84914 0.74484 0.80029 0.78468 1.16860 1.19266 1.19266 0.92534 0.91768 0.91768 0.93057 0.93071 0.86505 0.89773 0.95515 0.95250 0.77016 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.87 71.98 0.71 -1.91 16 2 C -0.10 -2.59 5.30 30.59 0.16 -2.43 16 3 C -0.13 -3.02 5.74 -10.76 -0.06 -3.08 16 4 H 0.13 2.38 8.07 -2.39 -0.02 2.36 16 5 C -0.16 -3.95 9.83 30.62 0.30 -3.65 16 6 C -0.17 -5.00 5.84 -10.79 -0.06 -5.07 16 7 H 0.12 3.13 8.04 -2.38 -0.02 3.11 16 8 C 0.17 7.04 5.03 86.38 0.43 7.48 16 9 N -0.75 -35.75 5.55 -467.40 -2.59 -38.35 16 10 C 0.53 32.32 7.75 86.36 0.67 32.99 16 11 O -0.64 -44.47 15.02 -4.33 -0.06 -44.54 16 12 C -0.57 -33.43 9.54 24.83 0.24 -33.19 16 13 H 0.09 4.64 7.85 -2.91 -0.02 4.61 16 14 C 0.03 1.51 5.50 85.30 0.47 1.98 16 15 N -0.82 -51.75 11.83 21.83 0.26 -51.49 16 16 Si 1.00 41.52 29.56 68.60 2.03 43.55 16 17 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.05 1.40 7.88 -2.39 -0.02 1.38 16 24 H 0.05 1.45 7.60 -2.38 -0.02 1.43 16 25 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.08 2.21 7.93 -2.39 -0.02 2.19 16 27 H 0.03 1.20 7.88 -2.39 -0.02 1.18 16 28 H 0.03 1.33 7.60 -2.39 -0.02 1.31 16 29 H 0.40 16.01 8.38 -92.71 -0.78 15.23 16 30 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -76.25 259.76 2.83 -73.42 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.34 Total: 24.28 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 2.86 Total: -6.88 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -2.34 Total: -89.84 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -0.06 Total: -44.54 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -76.25 2.83 -73.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388081143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.778 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds