Wall clock time and date at job start Mon Mar 30 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 H 1.09002 * 115.55911 * 330.69022 * 3 2 1 5 5 C 1.52997 * 117.49889 * 116.37594 * 3 2 1 6 6 C 1.53000 * 117.50223 * 185.00332 * 3 2 1 7 7 H 1.09004 * 117.49237 * 359.97438 * 6 3 2 8 8 C 1.52989 * 117.50008 * 145.02199 * 6 3 2 9 9 N 1.46506 * 109.47053 * 185.01252 * 8 6 3 10 10 C 1.34779 * 119.99949 * 179.97438 * 9 8 6 11 11 O 1.21685 * 120.00185 * 359.97438 * 10 9 8 12 12 C 1.46366 * 119.99845 * 180.02562 * 10 9 8 13 13 H 1.07997 * 120.00549 * 359.97438 * 12 10 9 14 14 C 1.40053 * 119.99937 * 179.97438 * 12 10 9 15 15 N 1.30665 * 120.00112 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99957 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46997 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47251 * 120.00380 * 16 14 12 19 19 H 1.48501 * 109.46901 * 240.00422 * 16 14 12 20 20 H 1.08997 * 109.46725 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46986 * 299.99881 * 1 2 3 22 22 H 1.09003 * 109.47066 * 59.99740 * 1 2 3 23 23 H 1.08999 * 109.46947 * 240.00651 * 2 1 3 24 24 H 1.08991 * 109.47447 * 120.00196 * 2 1 3 25 25 H 1.08999 * 117.49685 * 0.02562 * 5 3 2 26 26 H 1.08999 * 117.52022 * 214.97106 * 5 3 2 27 27 H 1.08997 * 109.47521 * 305.01305 * 8 6 3 28 28 H 1.09002 * 109.47645 * 65.01586 * 8 6 3 29 29 H 0.96991 * 119.99878 * 0.02562 * 9 8 6 30 30 H 0.96999 * 120.00079 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 -0.4814 5 6 2.8440 1.9075 1.2158 6 6 3.5502 1.6579 -0.1184 7 1 4.1803 0.7719 -0.1958 8 6 4.0300 2.8804 -0.9032 9 7 5.4910 2.8511 -1.0075 10 6 6.1398 3.8348 -1.6617 11 8 5.5120 4.7471 -2.1660 12 6 7.5994 3.8052 -1.7664 13 1 8.1566 2.9954 -1.3192 14 6 8.2735 4.8272 -2.4466 15 7 7.5995 5.8073 -2.9873 16 14 10.1365 4.7898 -2.5797 17 1 10.6581 3.5844 -1.8868 18 1 10.5298 4.7478 -4.0110 19 1 10.7024 6.0079 -1.9464 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.0099 1.1857 2.0155 26 1 2.7217 2.9427 1.5345 27 1 3.5940 2.8650 -1.9021 28 1 3.7209 3.7887 -0.3859 29 1 5.9914 2.1234 -0.6065 30 1 8.0664 6.5153 -3.4581 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388081159.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:05 Heat of formation + Delta-G solvation = -36.584811 kcal Electronic energy + Delta-G solvation = -12001.306286 eV Core-core repulsion = 9796.537359 eV Total energy + Delta-G solvation = -2204.768927 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.30354 -36.81041 -33.27054 -32.33878 -31.48983 -27.18277 -25.04137 -23.72521 -20.73794 -20.27284 -19.52180 -17.09724 -15.30894 -15.27300 -14.62925 -14.20786 -13.85293 -13.59583 -13.40835 -12.46357 -12.25364 -12.05647 -11.50149 -11.35177 -11.10529 -11.07008 -10.95047 -10.79567 -10.43608 -10.17268 -9.76390 -9.58141 -8.82288 -7.56665 -7.42220 -6.14951 -4.60134 3.15297 3.23163 3.27907 3.89332 4.14332 4.59407 4.63238 4.97631 4.99857 5.19088 5.23080 5.35408 5.54641 5.71197 5.76551 5.85396 5.90099 5.98908 6.04546 6.10704 6.21886 6.39690 6.56486 6.69793 7.47019 7.98830 8.16658 8.38192 9.06229 9.59835 10.64337 10.83242 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.090166 B = 0.006046 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.462695 B = 4629.760338 C = 4757.980020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.150 4.150 4 H 0.104 0.896 5 C -0.175 4.175 6 C -0.153 4.153 7 H 0.104 0.896 8 C 0.163 3.837 9 N -0.766 5.766 10 C 0.553 3.447 11 O -0.583 6.583 12 C -0.546 4.546 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.769 5.769 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.380 0.620 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 -9.782 6.142 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.169 4.169 4 H 0.122 0.878 5 C -0.212 4.212 6 C -0.171 4.171 7 H 0.122 0.878 8 C 0.038 3.962 9 N -0.421 5.421 10 C 0.357 3.643 11 O -0.466 6.466 12 C -0.583 4.583 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.398 5.398 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.211 0.789 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.083 -8.917 5.658 13.299 hybrid contribution 1.152 -0.351 0.165 1.215 sum -6.932 -9.268 5.822 12.956 Atomic orbital electron populations 1.21745 0.95708 1.01238 1.01909 1.21106 0.95725 0.94400 1.01792 1.22450 0.93831 0.97788 1.02799 0.87789 1.23197 1.04420 1.02170 0.91413 1.22670 0.94407 1.00550 0.99500 0.87752 1.20421 0.84023 0.93942 0.97827 1.46111 1.04360 1.29218 1.62460 1.18237 0.88514 0.80160 0.77379 1.90592 1.68957 1.36295 1.50747 1.20932 0.90172 1.09795 1.37393 0.91394 1.25715 0.99729 0.94330 0.93454 1.70035 1.36273 1.08024 1.25477 0.86323 0.83221 0.78827 0.78403 1.18790 1.20175 1.20183 0.92986 0.92728 0.92647 0.91695 0.92084 0.89187 0.88834 0.93152 0.93372 0.78861 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.87 37.16 0.37 -1.00 16 2 C -0.09 -0.98 6.22 -26.73 -0.17 -1.15 16 3 C -0.15 -1.91 5.46 -90.62 -0.49 -2.40 16 4 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 5 C -0.18 -2.28 9.82 -26.73 -0.26 -2.55 16 6 C -0.15 -2.31 5.57 -90.62 -0.50 -2.81 16 7 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 8 C 0.16 3.28 5.96 -4.04 -0.02 3.26 16 9 N -0.77 -17.86 5.55 -61.73 -0.34 -18.20 16 10 C 0.55 16.31 7.75 -12.99 -0.10 16.20 16 11 O -0.58 -19.52 15.02 5.20 0.08 -19.44 16 12 C -0.55 -15.81 9.54 -35.63 -0.34 -16.15 16 13 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 14 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 15 N -0.77 -23.56 11.83 55.55 0.66 -22.91 16 16 Si 0.91 20.44 29.56 -169.99 -5.02 15.41 16 17 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 25 H 0.09 1.03 8.03 -51.93 -0.42 0.62 16 26 H 0.09 1.26 8.03 -51.93 -0.42 0.84 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 29 H 0.38 7.76 8.38 -40.82 -0.34 7.42 16 30 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 262.11 15.07 3.95 3.95 Total: -1.00 -34.09 262.11 -6.79 -40.88 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.49 Total: 4.51 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -1.62 Total: -4.21 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.31 Total: -41.11 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.08 Total: -19.44 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.09 -6.79 -40.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388081159.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.296 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds