Wall clock time and date at job start Mon Mar 30 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 H 1.09002 * 115.55911 * 330.69022 * 3 2 1 5 5 C 1.52997 * 117.49889 * 116.37594 * 3 2 1 6 6 C 1.53000 * 117.50223 * 185.00332 * 3 2 1 7 7 H 1.09004 * 117.49237 * 359.97438 * 6 3 2 8 8 C 1.52989 * 117.50008 * 145.02199 * 6 3 2 9 9 N 1.46506 * 109.47053 * 185.01252 * 8 6 3 10 10 C 1.34779 * 119.99949 * 179.97438 * 9 8 6 11 11 O 1.21685 * 120.00185 * 359.97438 * 10 9 8 12 12 C 1.46366 * 119.99845 * 180.02562 * 10 9 8 13 13 H 1.07997 * 120.00549 * 359.97438 * 12 10 9 14 14 C 1.40053 * 119.99937 * 179.97438 * 12 10 9 15 15 N 1.30665 * 120.00112 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99957 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46997 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47251 * 120.00380 * 16 14 12 19 19 H 1.48501 * 109.46901 * 240.00422 * 16 14 12 20 20 H 1.08997 * 109.46725 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46986 * 299.99881 * 1 2 3 22 22 H 1.09003 * 109.47066 * 59.99740 * 1 2 3 23 23 H 1.08999 * 109.46947 * 240.00651 * 2 1 3 24 24 H 1.08991 * 109.47447 * 120.00196 * 2 1 3 25 25 H 1.08999 * 117.49685 * 0.02562 * 5 3 2 26 26 H 1.08999 * 117.52022 * 214.97106 * 5 3 2 27 27 H 1.08997 * 109.47521 * 305.01305 * 8 6 3 28 28 H 1.09002 * 109.47645 * 65.01586 * 8 6 3 29 29 H 0.96991 * 119.99878 * 0.02562 * 9 8 6 30 30 H 0.96999 * 120.00079 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 -0.4814 5 6 2.8440 1.9075 1.2158 6 6 3.5502 1.6579 -0.1184 7 1 4.1803 0.7719 -0.1958 8 6 4.0300 2.8804 -0.9032 9 7 5.4910 2.8511 -1.0075 10 6 6.1398 3.8348 -1.6617 11 8 5.5120 4.7471 -2.1660 12 6 7.5994 3.8052 -1.7664 13 1 8.1566 2.9954 -1.3192 14 6 8.2735 4.8272 -2.4466 15 7 7.5995 5.8073 -2.9873 16 14 10.1365 4.7898 -2.5797 17 1 10.6581 3.5844 -1.8868 18 1 10.5298 4.7478 -4.0110 19 1 10.7024 6.0079 -1.9464 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.0099 1.1857 2.0155 26 1 2.7217 2.9427 1.5345 27 1 3.5940 2.8650 -1.9021 28 1 3.7209 3.7887 -0.3859 29 1 5.9914 2.1234 -0.6065 30 1 8.0664 6.5153 -3.4581 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388081159.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:05 Heat of formation + Delta-G solvation = -60.378908 kcal Electronic energy + Delta-G solvation = -12002.338075 eV Core-core repulsion = 9796.537359 eV Total energy + Delta-G solvation = -2205.800716 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80152 -38.65863 -35.10438 -34.39467 -32.73564 -29.17525 -26.87074 -24.62150 -22.11094 -21.73547 -21.16985 -19.13680 -17.45806 -16.69171 -15.99653 -15.70523 -15.50218 -15.10763 -14.72322 -14.20383 -13.84924 -13.14725 -13.07048 -12.91728 -12.74691 -12.66283 -12.30284 -12.11419 -11.97351 -11.84779 -10.97789 -10.86456 -10.75835 -9.87619 -9.48158 -8.30301 -6.87399 1.40537 1.40937 1.59384 2.24739 2.45458 2.74628 3.15780 3.60384 3.72614 3.94170 4.02940 4.29665 4.35149 4.50174 4.58114 4.81908 4.83352 4.87553 4.97679 5.17187 5.24055 5.26234 5.31178 5.33461 5.52427 5.86398 6.22856 6.26752 6.85330 7.54432 8.47413 8.66252 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.090166 B = 0.006046 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.462695 B = 4629.760338 C = 4757.980020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.137 4.137 4 H 0.097 0.903 5 C -0.163 4.163 6 C -0.167 4.167 7 H 0.118 0.882 8 C 0.166 3.834 9 N -0.753 5.753 10 C 0.533 3.467 11 O -0.636 6.636 12 C -0.574 4.574 13 H 0.089 0.911 14 C 0.026 3.974 15 N -0.824 5.824 16 Si 1.002 2.998 17 H -0.246 1.246 18 H -0.268 1.268 19 H -0.268 1.268 20 H 0.066 0.934 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.396 0.604 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 -11.597 7.212 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.156 4.156 4 H 0.115 0.885 5 C -0.200 4.200 6 C -0.185 4.185 7 H 0.136 0.864 8 C 0.041 3.959 9 N -0.407 5.407 10 C 0.337 3.663 11 O -0.524 6.524 12 C -0.610 4.610 13 H 0.108 0.892 14 C -0.188 4.188 15 N -0.454 5.454 16 Si 0.821 3.179 17 H -0.169 1.169 18 H -0.193 1.193 19 H -0.193 1.193 20 H 0.085 0.915 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.133 0.867 26 H 0.104 0.896 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.230 0.770 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.168 -10.793 6.766 14.617 hybrid contribution 0.776 0.210 -0.154 0.819 sum -6.392 -10.583 6.612 14.020 Atomic orbital electron populations 1.21738 0.94620 1.02239 1.01900 1.21133 0.96641 0.92544 1.02458 1.22561 0.91821 0.99307 1.01862 0.88486 1.23282 1.02885 1.02554 0.91295 1.22450 0.96456 0.98627 1.00992 0.86404 1.20432 0.82025 0.95938 0.97458 1.45803 1.05842 1.28167 1.60913 1.18712 0.89444 0.80584 0.77535 1.90542 1.70051 1.38641 1.53166 1.21485 0.90428 1.11018 1.38087 0.89248 1.27043 1.06495 0.93182 0.92109 1.70203 1.39542 1.09208 1.26400 0.84912 0.74415 0.79661 0.78889 1.16861 1.19256 1.19281 0.91499 0.92382 0.93090 0.91708 0.90735 0.86675 0.89597 0.95266 0.95308 0.76991 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.87 71.98 0.71 -1.64 16 2 C -0.09 -1.68 6.22 30.60 0.19 -1.49 16 3 C -0.14 -3.27 5.46 -10.79 -0.06 -3.33 16 4 H 0.10 2.46 8.07 -2.39 -0.02 2.44 16 5 C -0.16 -3.95 9.82 30.60 0.30 -3.65 16 6 C -0.17 -4.87 5.57 -10.80 -0.06 -4.93 16 7 H 0.12 3.15 8.04 -2.38 -0.02 3.13 16 8 C 0.17 6.89 5.96 86.37 0.51 7.40 16 9 N -0.75 -35.65 5.55 -467.42 -2.59 -38.25 16 10 C 0.53 32.30 7.75 86.36 0.67 32.97 16 11 O -0.64 -44.54 15.02 -4.30 -0.06 -44.60 16 12 C -0.57 -33.40 9.54 24.83 0.24 -33.16 16 13 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 14 C 0.03 1.51 5.50 85.31 0.47 1.98 16 15 N -0.82 -51.65 11.83 21.84 0.26 -51.39 16 16 Si 1.00 41.46 29.56 68.60 2.03 43.49 16 17 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 18 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 20 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16 25 H 0.12 2.24 8.03 -2.39 -0.02 2.22 16 26 H 0.09 2.23 8.03 -2.39 -0.02 2.21 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.03 1.29 7.88 -2.39 -0.02 1.27 16 29 H 0.40 16.00 8.38 -92.72 -0.78 15.23 16 30 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -75.95 262.11 2.94 -73.01 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.34 Total: 23.60 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 2.97 Total: -5.86 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -2.34 Total: -89.64 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.06 Total: -44.60 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -75.95 2.94 -73.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388081159.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.627 kcal (2) G-P(sol) polarization free energy of solvation -75.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds