Wall clock time and date at job start Mon Mar 30 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46981 * 2 1 4 4 H 1.08997 * 115.56517 * 330.69273 * 3 2 1 5 5 C 1.53000 * 117.49504 * 116.38089 * 3 2 1 6 6 C 1.53002 * 60.00108 * 107.48780 * 5 3 2 7 7 H 1.08996 * 117.49577 * 107.48866 * 6 5 3 8 8 C 1.52997 * 117.50081 * 252.50820 * 6 5 3 9 9 N 1.46499 * 109.47385 * 243.60799 * 8 6 5 10 10 C 1.34769 * 119.99802 * 179.97438 * 9 8 6 11 11 O 1.21688 * 120.00424 * 359.97438 * 10 9 8 12 12 C 1.46381 * 119.99925 * 179.97438 * 10 9 8 13 13 H 1.08002 * 119.99976 * 353.94336 * 12 10 9 14 14 C 1.40044 * 120.00373 * 173.93996 * 12 10 9 15 15 N 1.30670 * 119.99951 * 6.14735 * 14 12 10 16 16 Si 1.86800 * 120.00323 * 186.15441 * 14 12 10 17 17 H 1.48491 * 109.47331 * 94.98001 * 16 14 12 18 18 H 1.48495 * 109.47300 * 214.98536 * 16 14 12 19 19 H 1.48501 * 109.46646 * 334.98211 * 16 14 12 20 20 H 1.09000 * 109.47144 * 300.00023 * 1 2 3 21 21 H 1.09002 * 109.47125 * 59.99313 * 1 2 3 22 22 H 1.09001 * 109.47091 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46672 * 240.00660 * 2 1 3 24 24 H 1.08995 * 109.47167 * 120.00303 * 2 1 3 25 25 H 1.08995 * 117.49845 * 0.02562 * 5 3 2 26 26 H 1.09002 * 117.49881 * 214.97807 * 5 3 2 27 27 H 1.09007 * 109.47059 * 3.61023 * 8 6 5 28 28 H 1.09004 * 109.47081 * 123.60698 * 8 6 5 29 29 H 0.96996 * 119.99606 * 359.97438 * 9 8 6 30 30 H 0.96997 * 120.00680 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 -0.4813 5 6 2.8440 1.9075 1.2159 6 6 3.5502 1.6579 -0.1183 7 1 3.8921 2.5288 -0.6774 8 6 4.4347 0.4143 -0.2276 9 7 5.8241 0.8214 -0.4516 10 6 6.7875 -0.1122 -0.5794 11 8 6.5035 -1.2934 -0.5084 12 6 8.1757 0.2945 -0.8037 13 1 8.4142 1.3355 -0.9643 14 6 9.1946 -0.6663 -0.8099 15 7 8.8957 -1.9362 -0.7360 16 14 10.9811 -0.1324 -0.9238 17 1 11.5589 -0.0428 0.4412 18 1 11.7449 -1.1260 -1.7204 19 1 11.0596 1.1960 -1.5828 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.0100 1.1856 2.0155 26 1 2.7214 2.9427 1.5344 27 1 4.3690 -0.1607 0.6961 28 1 4.0969 -0.1996 -1.0626 29 1 6.0505 1.7629 -0.5078 30 1 9.6014 -2.6016 -0.7399 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388081176.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:07 Heat of formation + Delta-G solvation = -35.783299 kcal Electronic energy + Delta-G solvation = -12144.680744 eV Core-core repulsion = 9939.946573 eV Total energy + Delta-G solvation = -2204.734170 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.40477 -36.78092 -33.09227 -32.27488 -31.50764 -27.20076 -24.98243 -23.84145 -21.21804 -19.71176 -19.31768 -16.98486 -15.62890 -15.27561 -14.39817 -14.28147 -13.79010 -13.63797 -13.38906 -12.40489 -12.15302 -12.05075 -11.49116 -11.31485 -11.16660 -11.03466 -10.93133 -10.63093 -10.41535 -10.18921 -9.68057 -9.60892 -8.81026 -7.56521 -7.41991 -6.15691 -4.59601 3.16318 3.23188 3.26942 3.91479 4.14713 4.62496 4.75889 4.80752 5.05974 5.23073 5.32879 5.42477 5.59078 5.70402 5.82730 5.85362 5.98391 6.05163 6.10441 6.21169 6.23849 6.47525 6.57055 6.69672 7.47314 7.98919 8.16883 8.38460 9.06346 9.59845 10.64192 10.83041 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079569 B = 0.006682 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.810660 B = 4189.061300 C = 4439.754641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.146 4.146 4 H 0.101 0.899 5 C -0.176 4.176 6 C -0.155 4.155 7 H 0.104 0.896 8 C 0.165 3.835 9 N -0.766 5.766 10 C 0.554 3.446 11 O -0.583 6.583 12 C -0.547 4.547 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.908 3.092 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.380 0.620 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 6.985 1.621 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.165 4.165 4 H 0.119 0.881 5 C -0.213 4.213 6 C -0.174 4.174 7 H 0.122 0.878 8 C 0.040 3.960 9 N -0.422 5.422 10 C 0.358 3.642 11 O -0.466 6.466 12 C -0.584 4.584 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.398 5.398 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.211 0.789 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.518 5.891 1.676 12.171 hybrid contribution 0.979 0.826 -0.048 1.282 sum -9.539 6.717 1.628 11.780 Atomic orbital electron populations 1.21740 0.95862 1.01358 1.01448 1.21122 0.95377 0.94363 1.02675 1.22405 0.93450 0.98016 1.02633 0.88122 1.23165 1.04601 1.01815 0.91754 1.22655 0.93547 1.00671 1.00507 0.87780 1.20388 0.82751 0.92897 0.99992 1.46120 1.05971 1.09341 1.80750 1.18228 0.84996 0.84411 0.76601 1.90591 1.82899 1.17513 1.55593 1.20900 0.90320 0.94613 1.52582 0.91413 1.25704 1.00458 0.94347 0.92661 1.70030 1.33450 1.00788 1.35538 0.86365 0.82543 0.79194 0.78675 1.19826 1.20471 1.18902 0.92912 0.92943 0.92854 0.91239 0.91627 0.88760 0.89255 0.93378 0.93104 0.78873 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.87 37.16 0.37 -1.14 16 2 C -0.10 -1.24 5.30 -26.73 -0.14 -1.38 16 3 C -0.15 -1.86 5.74 -90.62 -0.52 -2.38 16 4 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 5 C -0.18 -2.31 9.82 -26.73 -0.26 -2.57 16 6 C -0.16 -2.35 5.85 -90.62 -0.53 -2.88 16 7 H 0.10 1.48 8.04 -51.93 -0.42 1.07 16 8 C 0.16 3.31 5.04 -4.04 -0.02 3.29 16 9 N -0.77 -17.85 5.55 -61.72 -0.34 -18.20 16 10 C 0.55 16.29 7.74 -12.99 -0.10 16.19 16 11 O -0.58 -19.45 15.05 5.20 0.08 -19.37 16 12 C -0.55 -15.84 9.53 -35.63 -0.34 -16.18 16 13 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 14 C 0.09 2.50 5.49 -17.37 -0.10 2.41 16 15 N -0.77 -23.55 11.85 55.55 0.66 -22.89 16 16 Si 0.91 20.44 29.56 -169.99 -5.03 15.41 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.95 7.60 -51.92 -0.39 0.56 16 24 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 25 H 0.09 1.28 7.92 -51.93 -0.41 0.87 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.03 7.87 -51.92 -0.41 0.62 16 28 H 0.05 1.09 7.60 -51.93 -0.39 0.69 16 29 H 0.38 7.76 8.38 -40.82 -0.34 7.42 16 30 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 LS Contribution 259.79 15.07 3.91 3.91 Total: -1.00 -34.00 259.79 -6.79 -40.79 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.43 Total: 4.99 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.64 Total: -4.65 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.32 Total: -41.08 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.08 Total: -19.37 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.00 -6.79 -40.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388081176.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.008 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds