Wall clock time and date at job start Mon Mar 30 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46981 * 2 1 4 4 H 1.08997 * 115.56517 * 330.69273 * 3 2 1 5 5 C 1.53000 * 117.49504 * 116.38089 * 3 2 1 6 6 C 1.53002 * 60.00108 * 107.48780 * 5 3 2 7 7 H 1.08996 * 117.49577 * 107.48866 * 6 5 3 8 8 C 1.52997 * 117.50081 * 252.50820 * 6 5 3 9 9 N 1.46499 * 109.47385 * 243.60799 * 8 6 5 10 10 C 1.34769 * 119.99802 * 179.97438 * 9 8 6 11 11 O 1.21688 * 120.00424 * 359.97438 * 10 9 8 12 12 C 1.46381 * 119.99925 * 179.97438 * 10 9 8 13 13 H 1.08002 * 119.99976 * 353.94336 * 12 10 9 14 14 C 1.40044 * 120.00373 * 173.93996 * 12 10 9 15 15 N 1.30670 * 119.99951 * 6.14735 * 14 12 10 16 16 Si 1.86800 * 120.00323 * 186.15441 * 14 12 10 17 17 H 1.48491 * 109.47331 * 94.98001 * 16 14 12 18 18 H 1.48495 * 109.47300 * 214.98536 * 16 14 12 19 19 H 1.48501 * 109.46646 * 334.98211 * 16 14 12 20 20 H 1.09000 * 109.47144 * 300.00023 * 1 2 3 21 21 H 1.09002 * 109.47125 * 59.99313 * 1 2 3 22 22 H 1.09001 * 109.47091 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46672 * 240.00660 * 2 1 3 24 24 H 1.08995 * 109.47167 * 120.00303 * 2 1 3 25 25 H 1.08995 * 117.49845 * 0.02562 * 5 3 2 26 26 H 1.09002 * 117.49881 * 214.97807 * 5 3 2 27 27 H 1.09007 * 109.47059 * 3.61023 * 8 6 5 28 28 H 1.09004 * 109.47081 * 123.60698 * 8 6 5 29 29 H 0.96996 * 119.99606 * 359.97438 * 9 8 6 30 30 H 0.96997 * 120.00680 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 -0.4813 5 6 2.8440 1.9075 1.2159 6 6 3.5502 1.6579 -0.1183 7 1 3.8921 2.5288 -0.6774 8 6 4.4347 0.4143 -0.2276 9 7 5.8241 0.8214 -0.4516 10 6 6.7875 -0.1122 -0.5794 11 8 6.5035 -1.2934 -0.5084 12 6 8.1757 0.2945 -0.8037 13 1 8.4142 1.3355 -0.9643 14 6 9.1946 -0.6663 -0.8099 15 7 8.8957 -1.9362 -0.7360 16 14 10.9811 -0.1324 -0.9238 17 1 11.5589 -0.0428 0.4412 18 1 11.7449 -1.1260 -1.7204 19 1 11.0596 1.1960 -1.5828 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.0100 1.1856 2.0155 26 1 2.7214 2.9427 1.5344 27 1 4.3690 -0.1607 0.6961 28 1 4.0969 -0.1996 -1.0626 29 1 6.0505 1.7629 -0.5078 30 1 9.6014 -2.6016 -0.7399 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388081176.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:07 Heat of formation + Delta-G solvation = -59.664990 kcal Electronic energy + Delta-G solvation = -12145.716332 eV Core-core repulsion = 9939.946573 eV Total energy + Delta-G solvation = -2205.769758 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.88244 -38.68163 -35.02548 -34.34154 -32.73218 -29.21537 -26.86481 -24.78768 -22.39121 -21.80249 -20.65630 -18.98413 -17.44802 -16.90473 -15.97170 -15.88027 -15.36807 -15.02844 -14.90965 -14.24508 -13.74925 -13.27276 -13.10465 -12.86612 -12.72759 -12.62709 -12.34487 -12.15508 -11.99347 -11.75484 -10.96512 -10.82981 -10.78530 -9.87715 -9.47670 -8.31069 -6.86861 1.40314 1.41894 1.58167 2.24761 2.45639 2.75589 3.19191 3.58770 3.68931 3.93527 4.00142 4.28561 4.37865 4.47220 4.58575 4.80310 4.83630 4.88032 4.95376 5.18585 5.20741 5.27009 5.28624 5.31402 5.50714 5.86556 6.23198 6.27256 6.85392 7.54590 8.47379 8.66011 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079569 B = 0.006682 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.810660 B = 4189.061300 C = 4439.754641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.129 4.129 4 H 0.128 0.872 5 C -0.165 4.165 6 C -0.172 4.172 7 H 0.120 0.880 8 C 0.170 3.830 9 N -0.753 5.753 10 C 0.534 3.466 11 O -0.636 6.636 12 C -0.575 4.575 13 H 0.089 0.911 14 C 0.027 3.973 15 N -0.824 5.824 16 Si 1.002 2.998 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.247 1.247 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.026 0.974 28 H 0.030 0.970 29 H 0.396 0.604 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 9.296 1.670 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.147 4.147 4 H 0.146 0.854 5 C -0.201 4.201 6 C -0.191 4.191 7 H 0.138 0.862 8 C 0.045 3.955 9 N -0.408 5.408 10 C 0.338 3.662 11 O -0.524 6.524 12 C -0.612 4.612 13 H 0.107 0.893 14 C -0.188 4.188 15 N -0.454 5.454 16 Si 0.821 3.179 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.170 1.170 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.135 0.865 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.230 0.770 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.451 8.262 1.728 13.434 hybrid contribution 0.870 0.083 -0.056 0.875 sum -9.581 8.346 1.672 12.816 Atomic orbital electron populations 1.21695 0.93500 1.02036 1.02557 1.21163 0.97494 0.94354 1.01149 1.22541 0.91797 0.98385 1.02017 0.85398 1.23244 1.03025 1.03147 0.90727 1.22470 0.94472 0.98772 1.03353 0.86232 1.20365 0.81918 0.95207 0.97969 1.45820 1.06535 1.09324 1.79127 1.18702 0.86592 0.84464 0.76467 1.90542 1.83956 1.19826 1.58049 1.21457 0.90691 0.96019 1.53004 0.89263 1.27035 1.06585 0.93965 0.91173 1.70198 1.35939 1.02733 1.36491 0.84951 0.74342 0.79380 0.79242 1.18721 1.19671 1.17004 0.91766 0.91770 0.92533 0.93058 0.93066 0.89790 0.86501 0.95535 0.95222 0.77005 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.87 71.98 0.71 -1.90 16 2 C -0.10 -2.59 5.30 30.60 0.16 -2.43 16 3 C -0.13 -3.01 5.74 -10.79 -0.06 -3.08 16 4 H 0.13 2.38 8.07 -2.39 -0.02 2.36 16 5 C -0.16 -3.95 9.82 30.59 0.30 -3.65 16 6 C -0.17 -5.00 5.85 -10.79 -0.06 -5.07 16 7 H 0.12 3.13 8.04 -2.39 -0.02 3.11 16 8 C 0.17 7.04 5.04 86.38 0.43 7.47 16 9 N -0.75 -35.73 5.55 -467.40 -2.59 -38.33 16 10 C 0.53 32.35 7.74 86.36 0.67 33.02 16 11 O -0.64 -44.49 15.05 -4.31 -0.06 -44.56 16 12 C -0.58 -33.53 9.53 24.83 0.24 -33.29 16 13 H 0.09 4.64 7.85 -2.91 -0.02 4.61 16 14 C 0.03 1.55 5.49 85.30 0.47 2.02 16 15 N -0.82 -51.70 11.85 21.83 0.26 -51.44 16 16 Si 1.00 41.51 29.56 68.60 2.03 43.53 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 20 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 1.45 7.60 -2.38 -0.02 1.43 16 24 H 0.05 1.40 7.87 -2.39 -0.02 1.38 16 25 H 0.08 2.21 7.92 -2.39 -0.02 2.19 16 26 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.03 1.20 7.87 -2.38 -0.02 1.18 16 28 H 0.03 1.34 7.60 -2.38 -0.02 1.32 16 29 H 0.40 16.01 8.38 -92.71 -0.78 15.23 16 30 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 Total: -1.00 -76.21 259.79 2.83 -73.38 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.34 Total: 24.32 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 2.86 Total: -6.91 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.34 Total: -89.77 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.06 Total: -44.56 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -76.21 2.83 -73.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388081176.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.714 kcal (2) G-P(sol) polarization free energy of solvation -76.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds