Wall clock time and date at job start Mon Mar 30 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.20763 * 120.00577 * 2 1 4 4 C 1.50701 * 120.00038 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47363 * 179.97438 * 4 2 1 6 6 N 1.46496 * 109.47499 * 179.97438 * 5 4 2 7 7 C 1.36943 * 120.00274 * 270.00442 * 6 5 4 8 8 H 1.07997 * 120.00300 * 144.92526 * 7 6 5 9 9 C 1.38817 * 119.99408 * 324.92321 * 7 6 5 10 10 N 1.31620 * 120.00119 * 337.93451 * 9 7 6 11 11 Si 1.86796 * 119.99584 * 157.93810 * 9 7 6 12 12 H 1.48491 * 109.47473 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47099 * 120.00190 * 11 9 7 14 14 H 1.48498 * 109.47119 * 239.99265 * 11 9 7 15 15 C 1.46504 * 120.00237 * 89.99677 * 6 5 4 16 16 C 1.53000 * 117.49921 * 183.24237 * 15 6 5 17 17 C 1.52998 * 117.49703 * 114.57839 * 15 6 5 18 18 H 1.08998 * 109.47490 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.46993 * 300.00144 * 1 2 3 20 20 H 1.08998 * 109.47463 * 60.00061 * 1 2 3 21 21 H 1.09005 * 109.47190 * 59.99679 * 4 2 1 22 22 H 1.09004 * 109.47301 * 299.99888 * 4 2 1 23 23 H 1.09005 * 109.47091 * 59.99787 * 5 4 2 24 24 H 1.08998 * 109.47356 * 300.00242 * 5 4 2 25 25 H 0.96995 * 119.99672 * 175.91349 * 10 9 7 26 26 H 1.09004 * 115.54877 * 328.91115 * 15 6 5 27 27 H 1.08998 * 117.50153 * 359.97438 * 16 15 6 28 28 H 1.08995 * 117.49708 * 145.02504 * 16 15 6 29 29 H 1.08995 * 117.49988 * 214.98174 * 17 15 6 30 30 H 1.08997 * 117.49880 * 359.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 7 4.4972 -2.2943 -0.0011 7 6 4.8399 -2.8871 1.1849 8 1 4.8409 -3.9637 1.2700 9 6 5.1859 -2.1040 2.2776 10 7 5.6068 -0.8702 2.0963 11 14 5.0544 -2.8015 4.0055 12 1 4.5590 -4.1998 3.9385 13 1 6.3915 -2.7799 4.6512 14 1 4.1076 -1.9790 4.8006 15 6 4.8630 -2.9290 -1.2698 16 6 5.5599 -4.2894 -1.2039 17 6 6.3528 -3.0412 -1.5997 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.9971 -1.8763 -0.8908 22 1 1.9971 -1.8771 0.8892 23 1 4.0283 -0.4542 0.8889 24 1 4.0277 -0.4538 -0.8910 25 1 5.7919 -0.3036 2.8614 26 1 4.1758 -2.7551 -2.0978 27 1 5.7466 -4.7121 -0.2167 28 1 5.3316 -5.0103 -1.9889 29 1 6.6457 -2.9415 -2.6449 30 1 7.0606 -2.6424 -0.8731 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388405848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:24 Heat of formation + Delta-G solvation = 2.933167 kcal Electronic energy + Delta-G solvation = -12698.418416 eV Core-core repulsion = 10495.363117 eV Total energy + Delta-G solvation = -2203.055299 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.85154 -36.91385 -33.68968 -31.58145 -30.17657 -28.23713 -24.61761 -22.18872 -21.30804 -19.73396 -18.85058 -16.35095 -15.54617 -15.09646 -14.78841 -14.41997 -14.25898 -13.80182 -12.58882 -12.55366 -12.03689 -11.87893 -11.67387 -11.33077 -10.98167 -10.71509 -10.68619 -10.17855 -10.07163 -9.66180 -9.55626 -9.29111 -8.98431 -8.44905 -6.55586 -5.75804 -3.38203 2.52475 3.33978 3.43258 3.45389 4.41812 4.63519 4.95725 5.30445 5.36339 5.44586 5.56443 5.80154 5.92372 6.05009 6.11727 6.16429 6.30312 6.37406 6.50860 6.64441 6.75771 7.06126 7.10685 7.25009 7.76706 7.84975 8.08925 8.49580 9.16565 9.80156 10.35974 11.19179 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.014904 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.518439 B = 1878.227441 C = 2676.876582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.353 3.647 3 O -0.463 6.463 4 C -0.188 4.188 5 C 0.153 3.847 6 N -0.554 5.554 7 C -0.261 4.261 8 H 0.067 0.933 9 C 0.010 3.990 10 N -0.879 5.879 11 Si 0.894 3.106 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.287 1.287 15 C 0.120 3.880 16 C -0.196 4.196 17 C -0.223 4.223 18 H 0.077 0.923 19 H 0.084 0.916 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.106 0.894 24 H 0.030 0.970 25 H 0.255 0.745 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 -2.182 -4.314 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.228 3.772 3 O -0.337 6.337 4 C -0.228 4.228 5 C 0.027 3.973 6 N -0.270 5.270 7 C -0.391 4.391 8 H 0.085 0.915 9 C -0.191 4.191 10 N -0.521 5.521 11 Si 0.723 3.277 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.214 1.214 15 C 0.010 3.990 16 C -0.235 4.235 17 C -0.264 4.264 18 H 0.096 0.904 19 H 0.102 0.898 20 H 0.101 0.899 21 H 0.097 0.903 22 H 0.113 0.887 23 H 0.124 0.876 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.119 -1.503 -4.171 8.386 hybrid contribution -0.094 -0.453 0.905 1.017 sum -7.213 -1.956 -3.266 8.156 Atomic orbital electron populations 1.22308 0.96071 1.04006 1.03839 1.24846 0.91195 0.91238 0.69904 1.90380 1.71982 1.35481 1.35852 1.22799 1.01266 0.95480 1.03253 1.20806 0.85493 0.87854 1.03143 1.43492 1.60461 1.23341 0.99717 1.19114 1.40853 0.91467 0.87635 0.91513 1.25174 0.97875 0.96876 0.99195 1.70065 1.43969 1.08325 1.29709 0.86373 0.77500 0.78802 0.85031 1.19982 1.21601 1.21390 1.21233 0.91179 0.96010 0.90535 1.23034 1.07127 0.91285 1.02008 1.23362 0.99866 1.03567 0.99576 0.90377 0.89753 0.89859 0.90289 0.88725 0.87638 0.95166 0.93505 0.89656 0.88498 0.90800 0.91258 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.52 10.33 36.00 0.37 -2.15 16 2 C 0.35 6.20 7.27 -29.04 -0.21 5.99 16 3 O -0.46 -9.97 16.72 6.00 0.10 -9.87 16 4 C -0.19 -3.57 5.87 -27.88 -0.16 -3.74 16 5 C 0.15 3.68 4.63 -4.05 -0.02 3.66 16 6 N -0.55 -13.78 2.78 -165.66 -0.46 -14.24 16 7 C -0.26 -7.00 8.63 -15.05 -0.13 -7.13 16 8 H 0.07 1.78 6.55 -52.49 -0.34 1.44 16 9 C 0.01 0.26 4.96 -17.43 -0.09 0.18 16 10 N -0.88 -25.68 11.33 55.49 0.63 -25.05 16 11 Si 0.89 21.37 29.61 -169.99 -5.03 16.33 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 15 C 0.12 2.59 6.56 -67.93 -0.45 2.14 16 16 C -0.20 -3.90 9.80 -26.69 -0.26 -4.16 16 17 C -0.22 -4.66 10.36 -26.69 -0.28 -4.94 16 18 H 0.08 0.80 8.00 -51.93 -0.42 0.39 16 19 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 20 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 21 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 22 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 23 H 0.11 2.94 5.31 -51.93 -0.28 2.66 16 24 H 0.03 0.73 8.03 -51.93 -0.42 0.31 16 25 H 0.25 7.19 8.32 -40.82 -0.34 6.85 16 26 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 257.88 15.07 3.89 3.89 Total: -1.00 -30.35 257.88 -6.40 -36.75 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.30 Total: 2.34 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.22 Total: -10.15 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.17 Total: -39.29 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.10 Total: -9.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.35 -6.40 -36.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388405848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.687 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds