Wall clock time and date at job start Mon Mar 30 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.20763 * 120.00577 * 2 1 4 4 C 1.50701 * 120.00038 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47363 * 179.97438 * 4 2 1 6 6 N 1.46496 * 109.47499 * 179.97438 * 5 4 2 7 7 C 1.36943 * 120.00274 * 270.00442 * 6 5 4 8 8 H 1.07997 * 120.00300 * 144.92526 * 7 6 5 9 9 C 1.38817 * 119.99408 * 324.92321 * 7 6 5 10 10 N 1.31620 * 120.00119 * 337.93451 * 9 7 6 11 11 Si 1.86796 * 119.99584 * 157.93810 * 9 7 6 12 12 H 1.48491 * 109.47473 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47099 * 120.00190 * 11 9 7 14 14 H 1.48498 * 109.47119 * 239.99265 * 11 9 7 15 15 C 1.46504 * 120.00237 * 89.99677 * 6 5 4 16 16 C 1.53000 * 117.49921 * 183.24237 * 15 6 5 17 17 C 1.52998 * 117.49703 * 114.57839 * 15 6 5 18 18 H 1.08998 * 109.47490 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.46993 * 300.00144 * 1 2 3 20 20 H 1.08998 * 109.47463 * 60.00061 * 1 2 3 21 21 H 1.09005 * 109.47190 * 59.99679 * 4 2 1 22 22 H 1.09004 * 109.47301 * 299.99888 * 4 2 1 23 23 H 1.09005 * 109.47091 * 59.99787 * 5 4 2 24 24 H 1.08998 * 109.47356 * 300.00242 * 5 4 2 25 25 H 0.96995 * 119.99672 * 175.91349 * 10 9 7 26 26 H 1.09004 * 115.54877 * 328.91115 * 15 6 5 27 27 H 1.08998 * 117.50153 * 359.97438 * 16 15 6 28 28 H 1.08995 * 117.49708 * 145.02504 * 16 15 6 29 29 H 1.08995 * 117.49988 * 214.98174 * 17 15 6 30 30 H 1.08997 * 117.49880 * 359.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 7 4.4972 -2.2943 -0.0011 7 6 4.8399 -2.8871 1.1849 8 1 4.8409 -3.9637 1.2700 9 6 5.1859 -2.1040 2.2776 10 7 5.6068 -0.8702 2.0963 11 14 5.0544 -2.8015 4.0055 12 1 4.5590 -4.1998 3.9385 13 1 6.3915 -2.7799 4.6512 14 1 4.1076 -1.9790 4.8006 15 6 4.8630 -2.9290 -1.2698 16 6 5.5599 -4.2894 -1.2039 17 6 6.3528 -3.0412 -1.5997 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.9971 -1.8763 -0.8908 22 1 1.9971 -1.8771 0.8892 23 1 4.0283 -0.4542 0.8889 24 1 4.0277 -0.4538 -0.8910 25 1 5.7919 -0.3036 2.8614 26 1 4.1758 -2.7551 -2.0978 27 1 5.7466 -4.7121 -0.2167 28 1 5.3316 -5.0103 -1.9889 29 1 6.6457 -2.9415 -2.6449 30 1 7.0606 -2.6424 -0.8731 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388405848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:24 Heat of formation + Delta-G solvation = -15.598479 kcal Electronic energy + Delta-G solvation = -12699.222008 eV Core-core repulsion = 10495.363117 eV Total energy + Delta-G solvation = -2203.858891 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.35969 -38.67911 -35.51694 -33.42664 -31.67624 -29.79710 -26.55318 -23.91349 -22.95070 -21.56649 -20.31120 -18.27846 -17.32505 -16.80946 -16.32372 -15.99140 -15.76615 -15.56387 -14.41593 -14.03223 -13.72723 -13.26252 -13.03910 -12.85877 -12.82104 -12.60258 -12.43906 -12.02106 -11.88817 -11.51697 -11.35181 -10.94447 -10.50148 -10.44270 -8.55709 -7.79594 -5.47170 1.14247 1.43071 1.46284 1.56877 2.48134 3.10310 3.24334 3.40619 3.73523 4.27743 4.30007 4.41832 4.45400 4.55943 4.59035 4.71238 4.85390 4.93600 4.96789 5.05615 5.22264 5.36761 5.37955 5.53686 5.67327 5.86779 6.43129 6.72582 7.12976 7.84213 8.34511 9.11004 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.014904 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.518439 B = 1878.227441 C = 2676.876582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.354 3.646 3 O -0.513 6.513 4 C -0.179 4.179 5 C 0.154 3.846 6 N -0.571 5.571 7 C -0.257 4.257 8 H 0.069 0.931 9 C -0.045 4.045 10 N -0.919 5.919 11 Si 0.956 3.044 12 H -0.260 1.260 13 H -0.296 1.296 14 H -0.289 1.289 15 C 0.098 3.902 16 C -0.175 4.175 17 C -0.226 4.226 18 H 0.105 0.895 19 H 0.095 0.905 20 H 0.104 0.896 21 H 0.109 0.891 22 H 0.093 0.907 23 H 0.064 0.936 24 H 0.015 0.985 25 H 0.248 0.752 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -3.822 -5.227 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.233 3.767 3 O -0.391 6.391 4 C -0.219 4.219 5 C 0.028 3.972 6 N -0.288 5.288 7 C -0.387 4.387 8 H 0.086 0.914 9 C -0.242 4.242 10 N -0.563 5.563 11 Si 0.784 3.216 12 H -0.183 1.183 13 H -0.223 1.223 14 H -0.215 1.215 15 C -0.010 4.010 16 C -0.213 4.213 17 C -0.267 4.267 18 H 0.124 0.876 19 H 0.113 0.887 20 H 0.122 0.878 21 H 0.127 0.873 22 H 0.111 0.889 23 H 0.082 0.918 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.132 0.868 27 H 0.094 0.906 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.049 -3.183 -5.102 10.865 hybrid contribution 0.543 0.030 1.096 1.223 sum -8.506 -3.153 -4.006 9.917 Atomic orbital electron populations 1.22243 0.90917 1.06367 1.05261 1.25359 0.93836 0.89572 0.67888 1.90382 1.73555 1.36742 1.38392 1.22625 0.97703 0.96997 1.04552 1.20609 0.88932 0.87275 1.00402 1.43709 1.61256 1.23389 1.00487 1.19351 1.39204 0.91565 0.88617 0.91389 1.25919 0.98392 0.97197 1.02701 1.70229 1.46148 1.09799 1.30149 0.85390 0.76861 0.78745 0.80602 1.18341 1.22324 1.21522 1.21597 0.91995 0.97280 0.90126 1.23046 1.04970 0.91058 1.02187 1.23287 0.98574 1.04541 1.00309 0.87641 0.88667 0.87762 0.87338 0.88855 0.91785 0.96625 0.94235 0.86753 0.90602 0.86647 0.88063 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.02 10.33 71.23 0.74 -3.29 16 2 C 0.35 12.01 7.27 29.10 0.21 12.22 16 3 O -0.51 -22.39 16.72 -1.46 -0.02 -22.41 16 4 C -0.18 -6.59 5.87 29.85 0.18 -6.41 16 5 C 0.15 7.52 4.63 86.38 0.40 7.92 16 6 N -0.57 -28.46 2.78 -678.03 -1.88 -30.34 16 7 C -0.26 -13.87 8.63 84.03 0.73 -13.14 16 8 H 0.07 3.60 6.55 -2.91 -0.02 3.58 16 9 C -0.05 -2.53 4.96 84.86 0.42 -2.11 16 10 N -0.92 -55.89 11.33 21.65 0.25 -55.65 16 11 Si 0.96 44.63 29.61 68.60 2.03 46.66 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 13 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 14 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 15 C 0.10 4.09 6.56 44.99 0.30 4.38 16 16 C -0.17 -6.51 9.80 30.62 0.30 -6.21 16 17 C -0.23 -9.23 10.36 30.62 0.32 -8.91 16 18 H 0.10 1.67 8.00 -2.39 -0.02 1.65 16 19 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 20 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 22 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 23 H 0.06 3.73 5.31 -2.38 -0.01 3.72 16 24 H 0.02 0.77 8.03 -2.39 -0.02 0.75 16 25 H 0.25 14.69 8.32 -92.71 -0.77 13.92 16 26 H 0.11 4.07 8.14 -2.38 -0.02 4.05 16 27 H 0.08 3.17 6.37 -2.39 -0.02 3.15 16 28 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 29 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -68.47 257.88 5.06 -63.41 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.11 Total: 13.88 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.58 Total: -15.55 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.64 Total: -85.99 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.02 Total: -22.41 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.47 5.06 -63.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388405848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.815 kcal (2) G-P(sol) polarization free energy of solvation -68.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds