Wall clock time and date at job start Mon Mar 30 2020 02:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 N 1.46502 * 109.47047 * 120.99115 * 3 2 1 5 5 C 1.36931 * 120.00347 * 93.64296 * 4 3 2 6 6 H 1.07997 * 120.00034 * 219.68878 * 5 4 3 7 7 C 1.38807 * 119.99985 * 39.40678 * 5 4 3 8 8 N 1.31613 * 120.00588 * 211.39737 * 7 5 4 9 9 Si 1.86804 * 119.99809 * 31.40260 * 7 5 4 10 10 H 1.48502 * 109.46966 * 95.13885 * 9 7 5 11 11 H 1.48501 * 109.47401 * 215.14225 * 9 7 5 12 12 H 1.48502 * 109.47189 * 335.14055 * 9 7 5 13 13 C 1.46502 * 119.99717 * 273.64364 * 4 3 2 14 14 H 1.09004 * 110.45497 * 0.69726 * 13 4 3 15 15 C 1.54516 * 110.50938 * 238.09671 * 13 4 3 16 16 C 1.54475 * 104.05935 * 241.35606 * 15 13 4 17 17 O 1.44425 * 104.80666 * 23.97749 * 16 15 13 18 18 C 1.44788 * 105.29311 * 319.45303 * 17 16 15 19 19 H 1.08005 * 119.99973 * 180.02562 * 1 2 3 20 20 H 1.08003 * 120.00368 * 359.97438 * 1 2 3 21 21 H 1.07991 * 119.99766 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47184 * 0.98532 * 3 2 1 23 23 H 1.09003 * 109.46851 * 240.98751 * 3 2 1 24 24 H 0.97000 * 120.00776 * 179.97438 * 8 7 5 25 25 H 1.08996 * 110.50669 * 359.97438 * 15 13 4 26 26 H 1.08998 * 110.51114 * 122.70669 * 15 13 4 27 27 H 1.09000 * 110.36986 * 142.81190 * 16 15 13 28 28 H 1.09006 * 110.36842 * 265.03319 * 16 15 13 29 29 H 1.09003 * 110.42430 * 281.77354 * 18 17 16 30 30 H 1.09001 * 110.48623 * 159.32707 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9236 1.3725 1.1841 5 6 4.2284 0.9647 1.1066 6 1 4.6707 0.4118 1.9220 7 6 4.9810 1.2571 -0.0225 8 7 5.9296 0.4324 -0.4129 9 14 4.6476 2.8211 -0.9880 10 1 5.5720 3.8904 -0.5328 11 1 4.8615 2.5647 -2.4350 12 1 3.2441 3.2515 -0.7638 13 6 2.3875 1.8761 2.4511 14 1 1.3367 2.1439 2.3405 15 6 3.2071 3.0908 2.9410 16 6 3.7846 2.6311 4.2980 17 8 3.8035 1.1890 4.2216 18 6 2.5633 0.8249 3.5692 19 1 -0.5400 -0.9354 0.0004 20 1 -0.5401 0.9353 0.0004 21 1 1.8499 -0.9353 0.0004 22 1 1.3553 2.1335 0.0177 23 1 2.6768 1.3706 -0.8987 24 1 6.4553 0.6365 -1.2021 25 1 4.0114 3.3163 2.2408 26 1 2.5612 3.9585 3.0750 27 1 4.7952 3.0174 4.4307 28 1 3.1427 2.9612 5.1149 29 1 1.7332 0.8776 4.2736 30 1 2.6365 -0.1751 3.1418 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388444072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:58 Heat of formation + Delta-G solvation = -16.357907 kcal Electronic energy + Delta-G solvation = -13171.427142 eV Core-core repulsion = 10967.535320 eV Total energy + Delta-G solvation = -2203.891822 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26204 -37.46084 -34.44704 -33.56353 -31.40474 -29.46317 -27.26938 -24.92714 -23.31576 -21.26413 -20.81723 -18.53378 -17.47939 -17.03198 -16.52608 -16.12584 -15.61959 -15.16044 -14.75262 -14.69216 -13.95287 -13.56724 -12.93787 -12.76717 -12.49411 -12.27107 -12.12868 -12.01805 -11.78126 -11.61183 -11.53383 -10.70774 -10.46706 -10.12796 -8.64376 -8.20142 -5.49392 1.32847 1.41735 1.51496 1.55791 2.46883 3.04080 3.29156 3.41342 4.01193 4.22651 4.29007 4.38002 4.44578 4.47446 4.60392 4.75333 4.82975 4.95162 4.96874 4.99599 5.15922 5.29596 5.43267 5.85824 5.91156 6.04821 6.12096 6.37166 7.06842 7.70998 8.12662 9.00711 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.018931 C = 0.013561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.034356 B = 1478.666583 C = 2064.216118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.171 4.171 3 C 0.165 3.835 4 N -0.599 5.599 5 C -0.242 4.242 6 H 0.038 0.962 7 C -0.012 4.012 8 N -0.939 5.939 9 Si 0.914 3.086 10 H -0.298 1.298 11 H -0.301 1.301 12 H -0.235 1.235 13 C 0.137 3.863 14 H 0.099 0.901 15 C -0.165 4.165 16 C 0.049 3.951 17 O -0.406 6.406 18 C 0.040 3.960 19 H 0.105 0.895 20 H 0.110 0.890 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.260 0.740 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 5.595 4.730 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.191 4.191 3 C 0.041 3.959 4 N -0.321 5.321 5 C -0.372 4.372 6 H 0.055 0.945 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.741 3.259 10 H -0.226 1.226 11 H -0.229 1.229 12 H -0.158 1.158 13 C 0.030 3.970 14 H 0.117 0.883 15 C -0.204 4.204 16 C -0.027 4.027 17 O -0.326 6.326 18 C -0.038 4.038 19 H 0.123 0.877 20 H 0.128 0.872 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.425 5.428 4.692 13.491 hybrid contribution 0.699 0.389 -0.815 1.142 sum -10.725 5.817 3.878 12.802 Atomic orbital electron populations 1.23853 0.94532 1.02527 1.01386 1.23624 0.96754 0.99431 0.99338 1.20455 0.92326 0.93729 0.89390 1.44271 1.07124 1.73728 1.06940 1.18382 0.87867 1.27859 1.03055 0.94472 1.26065 0.96084 0.99676 0.99110 1.70136 1.26541 1.35875 1.25610 0.86290 0.79791 0.83104 0.76755 1.22608 1.22861 1.15777 1.22047 0.97219 0.91634 0.86082 0.88285 1.23354 1.00564 0.99363 0.97130 1.23396 1.01584 0.80818 0.96935 1.89137 1.40812 1.22264 1.80364 1.23918 0.86303 0.99490 0.94055 0.87651 0.87187 0.90310 0.91327 0.94480 0.93064 0.93044 0.88400 0.90432 0.89962 0.90129 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.15 14.32 67.78 0.97 -4.18 16 2 C -0.17 -6.27 9.85 25.64 0.25 -6.02 16 3 C 0.17 6.73 4.31 85.63 0.37 7.10 16 4 N -0.60 -27.08 1.94 -676.70 -1.31 -28.39 16 5 C -0.24 -13.57 8.31 84.03 0.70 -12.87 16 6 H 0.04 2.42 7.26 -2.91 -0.02 2.40 16 7 C -0.01 -0.72 5.05 84.86 0.43 -0.29 16 8 N -0.94 -59.31 13.97 21.65 0.30 -59.01 16 9 Si 0.91 44.75 26.31 68.60 1.80 46.55 16 10 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 11 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 12 H -0.23 -10.28 5.85 99.48 0.58 -9.69 16 13 C 0.14 5.00 3.64 46.01 0.17 5.17 16 14 H 0.10 2.95 7.91 -2.39 -0.02 2.93 16 15 C -0.16 -5.65 6.55 31.61 0.21 -5.45 16 16 C 0.05 1.62 7.63 72.48 0.55 2.17 16 17 O -0.41 -16.87 11.08 -148.98 -1.65 -18.52 16 18 C 0.04 1.49 6.64 72.48 0.48 1.97 16 19 H 0.11 2.54 8.06 -2.91 -0.02 2.51 16 20 H 0.11 2.59 7.83 -2.91 -0.02 2.57 16 21 H 0.08 3.28 8.06 -2.91 -0.02 3.26 16 22 H 0.07 2.38 7.67 -2.39 -0.02 2.36 16 23 H 0.04 1.69 4.64 -2.39 -0.01 1.68 16 24 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.05 2.15 7.39 -2.39 -0.02 2.13 16 26 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 2.63 8.01 -2.39 -0.02 2.61 16 Total: -1.00 -67.31 247.37 4.24 -63.07 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.97 Total: 8.70 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.13 Total: -12.40 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -1.01 Total: -87.40 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -1.65 Total: -18.52 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.80 Total: 46.55 kcal Total: -67.31 4.24 -63.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388444072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.709 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds