Wall clock time and date at job start Mon Mar 30 2020 02:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 115.54772 * 29.28020 * 3 2 1 5 5 C 1.52996 * 117.50257 * 243.61131 * 3 2 1 6 6 C 1.52994 * 117.50358 * 174.98462 * 3 2 1 7 7 H 1.09001 * 117.50160 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.50325 * 214.97940 * 6 3 2 9 9 O 1.21281 * 120.00001 * 0.02562 * 8 6 3 10 10 N 1.34775 * 120.00206 * 179.97438 * 8 6 3 11 11 C 1.46497 * 120.00354 * 180.02562 * 10 8 6 12 12 C 1.50695 * 109.47318 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00316 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99771 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00316 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46889 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46817 * 119.99927 * 16 14 12 19 19 H 1.48502 * 109.47385 * 240.00349 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 25 25 H 1.08999 * 117.50085 * 359.97438 * 5 3 2 26 26 H 1.09002 * 117.50028 * 144.99093 * 5 3 2 27 27 H 0.97002 * 119.99826 * 0.02562 * 10 8 6 28 28 H 1.08998 * 109.46917 * 300.00771 * 11 10 8 29 29 H 1.09002 * 109.46722 * 59.99946 * 11 10 8 30 30 H 0.97003 * 120.00135 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1717 0.4810 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6579 0.1186 7 1 4.1803 0.7720 0.1963 8 6 4.0226 2.8621 0.8918 9 8 3.2155 3.6166 1.3920 10 7 5.3421 3.1001 1.0282 11 6 5.8016 4.2704 1.7802 12 6 7.3081 4.3063 1.7826 13 1 7.8675 3.5345 1.2750 14 6 7.9723 5.3248 2.4327 15 7 7.2912 6.2645 3.0512 16 14 9.8398 5.3691 2.4362 17 1 10.3639 4.2061 1.6758 18 1 10.3063 6.6270 1.7996 19 1 10.3338 5.3095 3.8354 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.0103 1.1857 -2.0153 26 1 2.7212 2.9426 -1.5345 27 1 5.9877 2.4964 0.6285 28 1 5.4175 5.1767 1.3122 29 1 5.4376 4.2089 2.8059 30 1 7.7585 6.9808 3.5089 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395788743.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:36 Heat of formation + Delta-G solvation = -59.788804 kcal Electronic energy + Delta-G solvation = -12003.804050 eV Core-core repulsion = 9798.028923 eV Total energy + Delta-G solvation = -2205.775127 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.88862 -38.05898 -36.12811 -34.36542 -32.86736 -29.57803 -25.98151 -24.66060 -23.69226 -21.47038 -21.04464 -18.98038 -17.69229 -17.10375 -16.27125 -16.18801 -15.48554 -15.28558 -14.81394 -14.11152 -14.03006 -13.46581 -13.30458 -12.95893 -12.93530 -12.76342 -12.24726 -12.14546 -11.89940 -11.49074 -11.20553 -10.97435 -10.83957 -10.69216 -9.87175 -8.31424 -6.48697 1.42399 1.43914 1.57621 1.59109 2.29627 2.52294 2.90707 3.03669 3.75611 3.80071 3.93138 4.26789 4.30523 4.51857 4.61057 4.79165 4.94643 4.99260 5.10749 5.17673 5.18966 5.26720 5.32857 5.46042 5.52954 5.67003 5.81812 6.62437 6.88246 7.20836 7.46089 8.81320 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.090320 B = 0.006052 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.935343 B = 4625.166743 C = 4770.940578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.122 4.122 4 H 0.086 0.914 5 C -0.133 4.133 6 C -0.194 4.194 7 H 0.152 0.848 8 C 0.518 3.482 9 O -0.609 6.609 10 N -0.703 5.703 11 C 0.264 3.736 12 C -0.557 4.557 13 H 0.085 0.915 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.988 3.012 17 H -0.252 1.252 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.043 0.957 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.141 0.859 26 H 0.080 0.920 27 H 0.409 0.591 28 H -0.014 1.014 29 H -0.014 1.014 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 -13.770 -8.901 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.141 4.141 4 H 0.104 0.896 5 C -0.170 4.170 6 C -0.215 4.215 7 H 0.169 0.831 8 C 0.307 3.693 9 O -0.492 6.492 10 N -0.352 5.352 11 C 0.141 3.859 12 C -0.594 4.594 13 H 0.103 0.897 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.811 3.189 17 H -0.175 1.175 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.062 0.938 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.159 0.841 26 H 0.099 0.901 27 H 0.245 0.755 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.507 -13.074 -8.441 16.868 hybrid contribution 1.003 0.638 0.426 1.262 sum -5.505 -12.436 -8.015 15.786 Atomic orbital electron populations 1.21748 0.94818 1.02393 1.01721 1.21160 0.96536 0.91573 1.03193 1.22508 0.90469 0.99804 1.01302 0.89593 1.23204 1.00307 1.03148 0.90325 1.22344 0.98626 0.97746 1.02808 0.83067 1.20652 0.82250 0.86523 0.79916 1.90610 1.55309 1.51474 1.51840 1.46155 1.06703 1.28425 1.53888 1.18574 0.94736 0.83069 0.89490 1.21647 0.90654 1.11517 1.35612 0.89713 1.26112 1.05231 0.94364 0.93957 1.70151 1.38460 1.13751 1.34735 0.85063 0.76948 0.78731 0.78165 1.17549 1.20352 1.20351 0.93778 0.90984 0.92300 0.91384 0.89368 0.84128 0.90108 0.75487 0.99613 0.99597 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.87 71.98 0.71 -1.74 16 2 C -0.09 -1.56 6.22 30.59 0.19 -1.37 16 3 C -0.12 -3.13 5.25 -10.80 -0.06 -3.18 16 4 H 0.09 2.75 7.60 -2.38 -0.02 2.73 16 5 C -0.13 -3.09 9.88 30.59 0.30 -2.79 16 6 C -0.19 -5.58 5.91 -11.54 -0.07 -5.65 16 7 H 0.15 3.33 8.14 -2.39 -0.02 3.31 16 8 C 0.52 22.20 7.61 87.66 0.67 22.87 16 9 O -0.61 -32.22 16.26 -3.03 -0.05 -32.27 16 10 N -0.70 -31.35 5.55 -466.80 -2.59 -33.94 16 11 C 0.26 15.06 5.43 85.63 0.46 15.53 16 12 C -0.56 -30.96 9.28 25.60 0.24 -30.72 16 13 H 0.08 4.25 7.60 -2.91 -0.02 4.23 16 14 C 0.00 0.16 5.46 84.66 0.46 0.62 16 15 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 16 Si 0.99 42.70 29.54 68.60 2.03 44.73 16 17 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 21 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.09 1.18 7.88 -2.39 -0.02 1.16 16 25 H 0.14 2.17 8.03 -2.39 -0.02 2.15 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.41 15.04 8.32 -92.71 -0.77 14.27 16 28 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -72.65 263.72 2.93 -69.72 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.35 Total: 15.08 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 2.91 Total: -6.44 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -2.30 Total: -90.82 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.05 Total: -32.27 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -72.65 2.93 -69.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395788743.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.934 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds