Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08997 * 115.55338 * 330.66715 * 3 2 1 5 5 C 1.52999 * 117.49690 * 116.37766 * 3 2 1 6 6 C 1.52998 * 60.00063 * 107.48555 * 5 3 2 7 7 H 1.09004 * 117.51685 * 107.48039 * 6 5 3 8 8 C 1.50700 * 117.50389 * 252.50823 * 6 5 3 9 9 O 1.21281 * 119.99631 * 68.61790 * 8 6 5 10 10 N 1.34774 * 120.00136 * 248.62442 * 8 6 5 11 11 C 1.46503 * 120.00129 * 179.97438 * 10 8 6 12 12 C 1.50693 * 109.47477 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99675 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00272 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00240 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99968 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.46815 * 90.00505 * 16 14 12 18 18 H 1.48506 * 109.46846 * 210.00446 * 16 14 12 19 19 H 1.48498 * 109.46985 * 330.00538 * 16 14 12 20 20 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 21 21 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 22 22 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 23 23 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 24 24 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 25 25 H 1.09003 * 117.50034 * 214.97663 * 5 3 2 26 26 H 1.09006 * 117.50186 * 0.02562 * 5 3 2 27 27 H 0.96995 * 120.00245 * 359.97438 * 10 8 6 28 28 H 1.08998 * 109.47085 * 300.00042 * 11 10 8 29 29 H 1.09003 * 109.47206 * 59.99324 * 11 10 8 30 30 H 0.96994 * 119.99914 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3884 2.1716 -0.4817 5 6 2.8439 1.9076 1.2159 6 6 3.5501 1.6580 -0.1182 7 1 3.8920 2.5287 -0.6777 8 6 4.4214 0.4331 -0.2259 9 8 3.9193 -0.6709 -0.2166 10 7 5.7585 0.5645 -0.3323 11 6 6.6056 -0.6263 -0.4363 12 6 8.0493 -0.2080 -0.5439 13 1 8.3098 0.8401 -0.5360 14 6 9.0375 -1.1631 -0.6535 15 7 10.2975 -0.7980 -0.7469 16 14 8.5868 -2.9759 -0.6679 17 1 8.3515 -3.4163 -2.0664 18 1 9.6978 -3.7668 -0.0801 19 1 7.3530 -3.1856 0.1314 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.7212 2.9428 1.5344 26 1 3.0099 1.1858 2.0156 27 1 6.1600 1.4474 -0.3399 28 1 6.4716 -1.2461 0.4502 29 1 6.3254 -1.1952 -1.3230 30 1 10.9927 -1.4700 -0.8236 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395788744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -29.179959 kcal Electronic energy + Delta-G solvation = -12268.915861 eV Core-core repulsion = 10064.468033 eV Total energy + Delta-G solvation = -2204.447828 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.57440 -36.59557 -34.19896 -32.40689 -31.79896 -28.15390 -24.21260 -23.62981 -21.59629 -20.51966 -19.52488 -17.13252 -16.08851 -15.44271 -14.89177 -14.19642 -14.14860 -13.94474 -13.40004 -12.77697 -12.37649 -12.23833 -12.10016 -11.71450 -11.25869 -11.01771 -10.88505 -10.76736 -10.05348 -9.95601 -9.82332 -9.48754 -8.93737 -8.77150 -8.11007 -6.21218 -4.23373 3.05846 3.26819 3.33333 3.41801 3.89491 4.10790 4.33647 4.73266 5.02214 5.10222 5.14414 5.31192 5.46703 5.52369 5.62796 5.75904 5.86874 6.07450 6.11206 6.21881 6.43658 6.74305 6.83140 7.08027 7.26393 7.41109 8.15809 8.54953 8.76324 8.98441 9.39186 10.90831 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.061673 B = 0.007659 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.901038 B = 3654.718530 C = 4011.083339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.118 4.118 4 H 0.107 0.893 5 C -0.154 4.154 6 C -0.189 4.189 7 H 0.119 0.881 8 C 0.528 3.472 9 O -0.554 6.554 10 N -0.702 5.702 11 C 0.221 3.779 12 C -0.544 4.544 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.261 1.261 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.396 0.604 28 H 0.024 0.976 29 H 0.020 0.980 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.769 4.763 1.917 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.137 4.137 4 H 0.125 0.875 5 C -0.192 4.192 6 C -0.211 4.211 7 H 0.137 0.863 8 C 0.313 3.687 9 O -0.434 6.434 10 N -0.350 5.350 11 C 0.098 3.902 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.185 1.185 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.230 0.770 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.884 3.880 1.902 15.498 hybrid contribution 0.335 -0.354 -0.101 0.498 sum -14.548 3.526 1.802 15.078 Atomic orbital electron populations 1.21847 0.96808 1.01200 1.01017 1.21150 0.93596 0.93326 1.04192 1.22398 0.91125 0.99120 1.01029 0.87539 1.23037 1.02777 1.02429 0.90930 1.22350 0.95339 0.99578 1.03794 0.86332 1.19605 0.82862 0.89232 0.76976 1.90633 1.73738 1.27368 1.51679 1.46158 1.05599 1.11523 1.71725 1.19482 0.89940 0.84138 0.96607 1.21106 0.88477 0.95833 1.52723 0.90258 1.24799 0.94676 0.99273 0.93883 1.69884 0.99610 1.34414 1.49123 0.86811 0.78793 0.84848 0.79201 1.19853 1.20881 1.18529 0.93231 0.92974 0.93226 0.90224 0.91312 0.88258 0.88384 0.77003 0.95770 0.96198 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.87 37.16 0.37 -1.31 16 2 C -0.09 -1.21 4.47 -26.73 -0.12 -1.33 16 3 C -0.12 -1.51 5.74 -90.62 -0.52 -2.03 16 4 H 0.11 1.13 8.07 -51.93 -0.42 0.71 16 5 C -0.15 -1.90 9.88 -26.73 -0.26 -2.16 16 6 C -0.19 -2.72 6.19 -91.77 -0.57 -3.29 16 7 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 8 C 0.53 10.25 7.59 -10.99 -0.08 10.17 16 9 O -0.55 -12.39 13.10 5.56 0.07 -12.31 16 10 N -0.70 -14.62 5.55 -61.47 -0.34 -14.96 16 11 C 0.22 5.52 4.50 -5.20 -0.02 5.49 16 12 C -0.54 -15.11 9.83 -34.45 -0.34 -15.45 16 13 H 0.08 2.29 7.84 -52.48 -0.41 1.88 16 14 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 15 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 16 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 23 H 0.08 1.32 6.92 -51.93 -0.36 0.96 16 24 H 0.07 1.09 7.30 -51.93 -0.38 0.71 16 25 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.10 1.31 8.03 -51.93 -0.42 0.89 16 27 H 0.40 7.33 8.32 -40.82 -0.34 6.99 16 28 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 29 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 254.65 15.07 3.84 3.84 Total: -1.00 -31.04 254.65 -6.35 -37.39 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.37 Total: 2.82 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.65 Total: -7.80 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.43 Total: -40.90 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.04 -6.35 -37.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395788744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.206 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds