Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08997 * 115.55338 * 330.66715 * 3 2 1 5 5 C 1.52999 * 117.49690 * 116.37766 * 3 2 1 6 6 C 1.52998 * 60.00063 * 107.48555 * 5 3 2 7 7 H 1.09004 * 117.51685 * 107.48039 * 6 5 3 8 8 C 1.50700 * 117.50389 * 252.50823 * 6 5 3 9 9 O 1.21281 * 119.99631 * 68.61790 * 8 6 5 10 10 N 1.34774 * 120.00136 * 248.62442 * 8 6 5 11 11 C 1.46503 * 120.00129 * 179.97438 * 10 8 6 12 12 C 1.50693 * 109.47477 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99675 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00272 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00240 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99968 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.46815 * 90.00505 * 16 14 12 18 18 H 1.48506 * 109.46846 * 210.00446 * 16 14 12 19 19 H 1.48498 * 109.46985 * 330.00538 * 16 14 12 20 20 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 21 21 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 22 22 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 23 23 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 24 24 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 25 25 H 1.09003 * 117.50034 * 214.97663 * 5 3 2 26 26 H 1.09006 * 117.50186 * 0.02562 * 5 3 2 27 27 H 0.96995 * 120.00245 * 359.97438 * 10 8 6 28 28 H 1.08998 * 109.47085 * 300.00042 * 11 10 8 29 29 H 1.09003 * 109.47206 * 59.99324 * 11 10 8 30 30 H 0.96994 * 119.99914 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3884 2.1716 -0.4817 5 6 2.8439 1.9076 1.2159 6 6 3.5501 1.6580 -0.1182 7 1 3.8920 2.5287 -0.6777 8 6 4.4214 0.4331 -0.2259 9 8 3.9193 -0.6709 -0.2166 10 7 5.7585 0.5645 -0.3323 11 6 6.6056 -0.6263 -0.4363 12 6 8.0493 -0.2080 -0.5439 13 1 8.3098 0.8401 -0.5360 14 6 9.0375 -1.1631 -0.6535 15 7 10.2975 -0.7980 -0.7469 16 14 8.5868 -2.9759 -0.6679 17 1 8.3515 -3.4163 -2.0664 18 1 9.6978 -3.7668 -0.0801 19 1 7.3530 -3.1856 0.1314 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.7212 2.9428 1.5344 26 1 3.0099 1.1858 2.0156 27 1 6.1600 1.4474 -0.3399 28 1 6.4716 -1.2461 0.4502 29 1 6.3254 -1.1952 -1.3230 30 1 10.9927 -1.4700 -0.8236 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395788744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -50.431227 kcal Electronic energy + Delta-G solvation = -12269.837385 eV Core-core repulsion = 10064.468033 eV Total energy + Delta-G solvation = -2205.369352 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00914 -37.90405 -36.04822 -34.43293 -32.88560 -30.12764 -25.74850 -24.63971 -23.36926 -21.69385 -21.06845 -19.00667 -17.65397 -17.11616 -16.35344 -15.97659 -15.67945 -15.01723 -14.95815 -14.45743 -14.14919 -13.91649 -13.16251 -13.09905 -12.76933 -12.71794 -12.20613 -11.95697 -11.89848 -11.68628 -11.11697 -10.95450 -10.91771 -10.44694 -9.90857 -8.42432 -6.49659 1.30379 1.32406 1.45151 1.62322 2.25754 2.44482 2.90376 2.94243 3.67100 3.90902 4.00494 4.21673 4.38588 4.55204 4.68045 4.74424 4.81562 4.92450 4.99597 5.06350 5.21753 5.24004 5.27869 5.36370 5.52646 5.67313 6.07320 6.51383 6.86070 7.13651 7.43116 8.72469 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.061673 B = 0.007659 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.901038 B = 3654.718530 C = 4011.083339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.112 4.112 4 H 0.141 0.859 5 C -0.137 4.137 6 C -0.203 4.203 7 H 0.147 0.853 8 C 0.522 3.478 9 O -0.588 6.588 10 N -0.705 5.705 11 C 0.233 3.767 12 C -0.548 4.548 13 H 0.059 0.941 14 C 0.027 3.973 15 N -0.931 5.931 16 Si 0.938 3.062 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.262 1.262 20 H 0.064 0.936 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.041 0.959 25 H 0.137 0.863 26 H 0.082 0.918 27 H 0.407 0.593 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 5.603 2.084 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.130 4.130 4 H 0.159 0.841 5 C -0.174 4.174 6 C -0.223 4.223 7 H 0.165 0.835 8 C 0.310 3.690 9 O -0.470 6.470 10 N -0.354 5.354 11 C 0.109 3.891 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.173 4.173 15 N -0.569 5.569 16 Si 0.762 3.238 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.187 1.187 20 H 0.083 0.917 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.155 0.845 26 H 0.100 0.900 27 H 0.243 0.757 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.681 4.750 2.072 17.468 hybrid contribution 0.878 -0.577 -0.139 1.060 sum -15.803 4.173 1.933 16.459 Atomic orbital electron populations 1.21780 0.94151 1.01689 1.02495 1.21066 0.95934 0.94054 1.01381 1.22577 0.90221 0.98775 1.01464 0.84143 1.23172 1.00612 1.04087 0.89572 1.22349 0.95467 0.97962 1.06555 0.83484 1.20526 0.82450 0.90660 0.75329 1.90625 1.74169 1.29403 1.52812 1.46051 1.06149 1.10756 1.72482 1.19068 0.89121 0.85537 0.95371 1.21301 0.90031 0.95049 1.52247 0.92320 1.25604 0.94561 1.03654 0.93526 1.69981 1.00650 1.36081 1.50236 0.85848 0.78642 0.79767 0.79573 1.18944 1.19578 1.18675 0.91691 0.93133 0.91677 0.93349 0.93975 0.84523 0.89981 0.75720 0.97170 0.97234 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.87 71.98 0.71 -2.15 16 2 C -0.09 -2.38 4.47 30.60 0.14 -2.25 16 3 C -0.11 -2.53 5.74 -10.79 -0.06 -2.59 16 4 H 0.14 2.28 8.07 -2.39 -0.02 2.26 16 5 C -0.14 -2.93 9.88 30.59 0.30 -2.63 16 6 C -0.20 -5.34 6.19 -11.54 -0.07 -5.41 16 7 H 0.15 3.05 8.14 -2.38 -0.02 3.03 16 8 C 0.52 20.08 7.59 87.66 0.67 20.75 16 9 O -0.59 -26.69 13.10 -3.03 -0.04 -26.73 16 10 N -0.71 -29.34 5.55 -466.79 -2.59 -31.93 16 11 C 0.23 11.77 4.50 85.63 0.38 12.16 16 12 C -0.55 -30.95 9.83 25.60 0.25 -30.70 16 13 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 14 C 0.03 1.54 5.47 84.65 0.46 2.01 16 15 N -0.93 -56.19 13.96 21.45 0.30 -55.89 16 16 Si 0.94 44.78 27.47 68.60 1.88 46.67 16 17 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.26 -12.49 6.54 99.48 0.65 -11.84 16 20 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.05 1.62 6.92 -2.39 -0.02 1.60 16 24 H 0.04 1.35 7.30 -2.39 -0.02 1.33 16 25 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.08 2.05 8.03 -2.38 -0.02 2.03 16 27 H 0.41 14.95 8.32 -92.71 -0.77 14.17 16 28 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 29 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.74 254.65 2.63 -65.11 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.30 Total: 13.59 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 2.78 Total: -10.82 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -2.29 Total: -87.82 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.04 Total: -26.73 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -67.74 2.63 -65.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395788744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.679 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds