Wall clock time and date at job start Mon Mar 30 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08999 * 115.54994 * 29.27668 * 3 2 1 5 5 C 1.53000 * 117.49617 * 243.60652 * 3 2 1 6 6 C 1.52995 * 59.99959 * 252.50820 * 5 3 2 7 7 H 1.08998 * 117.50330 * 252.50582 * 6 5 3 8 8 C 1.50705 * 117.49597 * 107.49316 * 6 5 3 9 9 O 1.21284 * 119.99621 * 291.37184 * 8 6 5 10 10 N 1.34773 * 120.00417 * 111.38143 * 8 6 5 11 11 C 1.46503 * 120.00316 * 179.97438 * 10 8 6 12 12 C 1.50698 * 109.47225 * 179.97438 * 11 10 8 13 13 H 1.08006 * 120.00090 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00144 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99789 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00097 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46975 * 59.99922 * 16 14 12 18 18 H 1.48501 * 109.46987 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47254 * 299.99873 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 25 25 H 1.08995 * 117.50026 * 359.97438 * 5 3 2 26 26 H 1.09006 * 117.49723 * 144.99463 * 5 3 2 27 27 H 0.97003 * 119.99654 * 359.97438 * 10 8 6 28 28 H 1.08992 * 109.46914 * 299.99813 * 11 10 8 29 29 H 1.09000 * 109.46932 * 59.99557 * 11 10 8 30 30 H 0.97003 * 119.99937 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8443 1.9074 -1.2157 6 6 3.5501 1.6580 0.1186 7 1 3.8919 2.5289 0.6778 8 6 4.4214 0.4331 0.2265 9 8 3.9193 -0.6709 0.2173 10 7 5.7584 0.5644 0.3333 11 6 6.6054 -0.6264 0.4388 12 6 8.0492 -0.2080 0.5453 13 1 8.3100 0.8400 0.5351 14 6 9.0374 -1.1632 0.6549 15 7 8.7200 -2.4393 0.6669 16 14 10.8272 -0.6446 0.7862 17 1 11.0102 0.2010 1.9931 18 1 11.6857 -1.8516 0.8932 19 1 11.2085 0.1289 -0.4227 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.0104 1.1856 -2.0152 26 1 2.7213 2.9425 -1.5346 27 1 6.1600 1.4474 0.3404 28 1 6.3249 -1.1942 1.3258 29 1 6.4717 -1.2469 -0.4473 30 1 9.4152 -3.1114 0.7443 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395788745.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:40 Heat of formation + Delta-G solvation = -54.182747 kcal Electronic energy + Delta-G solvation = -12217.763676 eV Core-core repulsion = 10012.231645 eV Total energy + Delta-G solvation = -2205.532030 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.96946 -37.86811 -36.03447 -34.37230 -32.86636 -29.54995 -25.90303 -24.65418 -23.65545 -21.68152 -20.99487 -18.73284 -17.55719 -17.05071 -16.32881 -16.04684 -15.61099 -15.03668 -14.82174 -14.17023 -13.98234 -13.82035 -13.10940 -13.03582 -12.76081 -12.67885 -12.24628 -12.20257 -11.89296 -11.52824 -11.11198 -10.92551 -10.80008 -10.40911 -9.80760 -8.30698 -6.47998 1.42023 1.46523 1.54851 1.66293 2.31364 2.57379 2.92781 3.04156 3.67916 3.92924 4.01403 4.23864 4.38481 4.54722 4.67599 4.80970 4.89792 5.01672 5.13204 5.21314 5.21502 5.27509 5.35599 5.47836 5.65558 5.71402 5.83760 6.63103 6.93546 7.21856 7.51971 8.81505 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079821 B = 0.006738 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.698580 B = 4154.262298 C = 4412.056934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.113 4.113 4 H 0.143 0.857 5 C -0.136 4.136 6 C -0.200 4.200 7 H 0.151 0.849 8 C 0.516 3.484 9 O -0.594 6.594 10 N -0.707 5.707 11 C 0.267 3.733 12 C -0.559 4.559 13 H 0.083 0.917 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.284 1.284 19 H -0.261 1.261 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.407 0.593 28 H -0.014 1.014 29 H -0.015 1.015 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 11.856 -1.765 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.131 4.131 4 H 0.161 0.839 5 C -0.173 4.173 6 C -0.221 4.221 7 H 0.168 0.832 8 C 0.304 3.696 9 O -0.476 6.476 10 N -0.356 5.356 11 C 0.144 3.856 12 C -0.596 4.596 13 H 0.101 0.899 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.810 3.190 17 H -0.186 1.186 18 H -0.210 1.210 19 H -0.186 1.186 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.158 0.842 27 H 0.243 0.757 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.731 10.886 -1.758 15.387 hybrid contribution 1.293 -0.270 0.147 1.329 sum -9.438 10.616 -1.611 14.296 Atomic orbital electron populations 1.21775 0.93969 1.01672 1.02595 1.21055 0.96060 0.94241 1.01128 1.22572 0.90356 0.98598 1.01618 0.83898 1.23164 1.00576 1.04093 0.89483 1.22355 0.95389 0.97836 1.06532 0.83164 1.20642 0.82782 0.90648 0.75480 1.90633 1.74294 1.29798 1.52888 1.46207 1.06213 1.10929 1.72270 1.18515 0.89481 0.83799 0.93775 1.21599 0.90846 0.94552 1.52647 0.89858 1.26098 1.05240 0.94484 0.93792 1.70137 1.35725 1.01511 1.49696 0.85176 0.76608 0.77723 0.79516 1.18601 1.20980 1.18596 0.93247 0.91517 0.91548 0.93728 0.94302 0.90308 0.84183 0.75741 0.99650 0.99709 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.87 71.98 0.71 -2.40 16 2 C -0.09 -2.62 4.48 30.60 0.14 -2.49 16 3 C -0.11 -2.75 5.74 -10.79 -0.06 -2.81 16 4 H 0.14 2.47 8.07 -2.39 -0.02 2.46 16 5 C -0.14 -3.09 9.88 30.59 0.30 -2.79 16 6 C -0.20 -5.61 6.19 -11.54 -0.07 -5.68 16 7 H 0.15 3.22 8.14 -2.39 -0.02 3.20 16 8 C 0.52 21.60 7.59 87.66 0.67 22.26 16 9 O -0.59 -29.98 13.10 -3.04 -0.04 -30.02 16 10 N -0.71 -31.30 5.55 -466.79 -2.59 -33.89 16 11 C 0.27 15.17 5.43 85.63 0.46 15.63 16 12 C -0.56 -31.12 9.28 25.60 0.24 -30.88 16 13 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 14 C 0.00 0.19 5.46 84.65 0.46 0.65 16 15 N -0.93 -57.21 13.29 21.44 0.28 -56.92 16 16 Si 0.99 42.76 29.54 68.60 2.03 44.79 16 17 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.04 1.64 6.92 -2.39 -0.02 1.62 16 24 H 0.04 1.36 7.30 -2.39 -0.02 1.35 16 25 H 0.08 2.12 8.03 -2.39 -0.02 2.10 16 26 H 0.14 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.41 14.99 8.32 -92.71 -0.77 14.22 16 28 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 29 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -71.53 258.25 2.88 -68.65 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.35 Total: 15.89 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 2.85 Total: -8.50 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -2.30 Total: -90.82 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.04 Total: -30.02 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -71.53 2.88 -68.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395788745.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.470 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds