Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47193 * 2 1 4 4 H 1.08997 * 115.55899 * 330.68841 * 3 2 1 5 5 C 1.52999 * 117.49817 * 116.37610 * 3 2 1 6 6 C 1.52999 * 117.49768 * 185.00173 * 3 2 1 7 7 H 1.08997 * 117.49820 * 0.02562 * 6 3 2 8 8 C 1.50701 * 117.49784 * 145.02201 * 6 3 2 9 9 O 1.21280 * 119.99781 * 359.97438 * 8 6 3 10 10 N 1.34771 * 119.99622 * 180.02562 * 8 6 3 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 6 12 12 C 1.50703 * 109.47064 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46999 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46942 * 119.99666 * 16 14 12 19 19 H 1.48504 * 109.46979 * 239.99580 * 16 14 12 20 20 H 1.08996 * 109.47408 * 300.00049 * 1 2 3 21 21 H 1.09001 * 109.46945 * 60.00167 * 1 2 3 22 22 H 1.09005 * 109.47093 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47099 * 240.00183 * 2 1 3 24 24 H 1.09006 * 109.47128 * 120.00281 * 2 1 3 25 25 H 1.09005 * 117.49781 * 0.02562 * 5 3 2 26 26 H 1.08991 * 117.49730 * 214.97953 * 5 3 2 27 27 H 0.96996 * 120.00772 * 359.97438 * 10 8 6 28 28 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 29 29 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 30 30 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 -0.4814 5 6 2.8440 1.9076 1.2159 6 6 3.5502 1.6579 -0.1183 7 1 4.1802 0.7719 -0.1966 8 6 4.0228 2.8620 -0.8914 9 8 3.2158 3.6164 -1.3918 10 7 5.3424 3.0999 -1.0276 11 6 5.8019 4.2702 -1.7797 12 6 7.3085 4.3061 -1.7817 13 1 7.8677 3.5346 -1.2733 14 6 7.9729 5.3244 -2.4318 15 7 7.2919 6.2642 -3.0505 16 14 9.8404 5.3686 -2.4350 17 1 10.3643 4.2057 -1.6744 18 1 10.3346 5.3089 -3.8340 19 1 10.3069 6.6266 -1.7984 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.0099 1.1857 2.0156 26 1 2.7213 2.9427 1.5343 27 1 5.9879 2.4963 -0.6278 28 1 5.4382 4.2087 -2.8054 29 1 5.4179 5.1766 -1.3117 30 1 7.7593 6.9808 -3.5075 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395788746.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = -37.722363 kcal Electronic energy + Delta-G solvation = -12002.857592 eV Core-core repulsion = 9798.039337 eV Total energy + Delta-G solvation = -2204.818255 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.30312 -36.72347 -34.11359 -32.32604 -31.93723 -27.51526 -24.38449 -23.63324 -21.90155 -20.34879 -19.41836 -17.21166 -15.83389 -15.29912 -14.67434 -14.60823 -14.29146 -13.91616 -13.24040 -12.55903 -12.27268 -12.08805 -11.87928 -11.73860 -11.32228 -11.01293 -10.93017 -10.90985 -10.31834 -10.08726 -9.86011 -9.36665 -9.00151 -8.72835 -7.85348 -6.15852 -4.22679 3.16764 3.24136 3.31027 3.34366 3.96448 4.16610 4.36677 4.85235 4.93552 5.05437 5.20218 5.24181 5.32974 5.48534 5.61831 5.71859 5.86258 5.93240 6.04433 6.11536 6.16891 6.46781 7.32828 7.47231 7.53055 7.68977 7.98210 8.66765 8.80117 9.14628 9.44262 10.94522 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.090319 B = 0.006052 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.938664 B = 4625.144755 C = 4770.916700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.124 4.124 4 H 0.116 0.884 5 C -0.152 4.152 6 C -0.186 4.186 7 H 0.117 0.883 8 C 0.525 3.475 9 O -0.559 6.559 10 N -0.708 5.708 11 C 0.248 3.752 12 C -0.542 4.542 13 H 0.064 0.936 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.391 0.609 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 -11.397 7.279 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.142 4.142 4 H 0.134 0.866 5 C -0.190 4.190 6 C -0.207 4.207 7 H 0.135 0.865 8 C 0.310 3.690 9 O -0.439 6.439 10 N -0.356 5.356 11 C 0.128 3.872 12 C -0.581 4.581 13 H 0.082 0.918 14 C -0.141 4.141 15 N -0.524 5.524 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.224 0.776 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.728 -10.654 6.785 14.808 hybrid contribution 1.485 -0.132 0.088 1.494 sum -6.242 -10.786 6.873 14.231 Atomic orbital electron populations 1.21738 0.95437 1.01300 1.02142 1.21140 0.96034 0.94024 1.01901 1.22422 0.92200 0.98224 1.01368 0.86567 1.23043 1.02693 1.02862 0.90372 1.22392 0.96982 0.99651 1.01668 0.86468 1.19565 0.83301 0.85447 0.80655 1.90638 1.54222 1.49178 1.49819 1.46394 1.05512 1.29521 1.54134 1.19123 0.94253 0.82441 0.91430 1.21274 0.90726 1.10778 1.35283 0.91820 1.24961 0.99117 0.95120 0.94853 1.69989 1.35759 1.12791 1.33820 0.86353 0.84551 0.78078 0.77888 1.19622 1.20781 1.20786 0.92613 0.92484 0.92881 0.91542 0.91891 0.88293 0.88447 0.77629 0.95532 0.95572 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.87 37.16 0.37 -1.02 16 2 C -0.09 -0.98 6.22 -26.73 -0.17 -1.15 16 3 C -0.12 -1.68 5.25 -90.62 -0.48 -2.15 16 4 H 0.12 1.82 7.60 -51.93 -0.39 1.42 16 5 C -0.15 -1.97 9.88 -26.73 -0.26 -2.24 16 6 C -0.19 -2.83 5.91 -91.77 -0.54 -3.37 16 7 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 8 C 0.53 11.04 7.61 -10.99 -0.08 10.96 16 9 O -0.56 -14.03 16.26 5.56 0.09 -13.94 16 10 N -0.71 -15.56 5.55 -61.47 -0.34 -15.90 16 11 C 0.25 6.77 5.43 -5.19 -0.03 6.74 16 12 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 13 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 16 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 25 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 26 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.39 7.38 8.32 -40.82 -0.34 7.05 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -31.92 263.72 -6.65 -38.56 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.48 Total: 2.85 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.61 Total: -5.86 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.40 Total: -41.60 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.92 -6.65 -38.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395788746.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.842 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds