Wall clock time and date at job start Mon Mar 30 2020 02:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.67300 * 2 1 4 4 C 1.53398 * 109.67393 * 239.46372 * 2 1 3 5 5 N 1.46860 * 108.77633 * 190.84248 * 4 2 1 6 6 C 1.36938 * 120.38071 * 237.60036 * 5 4 2 7 7 H 1.08003 * 120.00218 * 29.09828 * 6 5 4 8 8 C 1.38809 * 119.99811 * 209.10012 * 6 5 4 9 9 N 1.31620 * 120.00242 * 17.95042 * 8 6 5 10 10 Si 1.86797 * 119.99844 * 197.94504 * 8 6 5 11 11 H 1.48506 * 109.47486 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47303 * 120.00155 * 10 8 6 13 13 H 1.48504 * 109.47444 * 240.00050 * 10 8 6 14 14 C 1.46852 * 119.23972 * 57.61798 * 5 4 2 15 15 C 1.53403 * 108.77696 * 302.38212 * 14 5 4 16 16 H 1.09002 * 109.67555 * 169.15308 * 15 14 5 17 17 C 1.52998 * 109.67195 * 289.69139 * 15 14 5 18 18 C 1.51291 * 109.67443 * 120.49759 * 2 1 3 19 19 O 1.20763 * 120.80758 * 352.71396 * 18 2 1 20 20 H 1.09001 * 109.47164 * 299.50373 * 1 2 3 21 21 H 1.08998 * 109.47296 * 179.50525 * 1 2 3 22 22 H 1.09005 * 109.47155 * 59.50011 * 1 2 3 23 23 H 1.08994 * 109.58553 * 310.62973 * 4 2 1 24 24 H 1.08998 * 109.58698 * 71.05507 * 4 2 1 25 25 H 0.97001 * 119.99969 * 180.02562 * 9 8 6 26 26 H 1.08996 * 109.58728 * 182.59391 * 14 5 4 27 27 H 1.09002 * 109.70382 * 62.23713 * 14 5 4 28 28 H 1.09004 * 109.46781 * 178.96466 * 17 15 14 29 29 H 1.08994 * 109.46878 * 298.96446 * 17 15 14 30 30 H 1.09004 * 109.47359 * 58.96568 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0464 -0.7339 -1.2441 5 7 3.4914 -0.9517 -1.0986 6 6 4.3629 -0.4665 -2.0368 7 1 4.1144 0.4238 -2.5954 8 6 5.5657 -1.1191 -2.2700 9 7 5.7268 -2.3638 -1.8738 10 14 6.9556 -0.2306 -3.1464 11 1 6.5249 1.1495 -3.4858 12 1 8.1443 -0.1732 -2.2582 13 1 7.3030 -0.9615 -4.3916 14 6 3.9911 -1.6962 0.0644 15 6 3.5247 -0.9870 1.3423 16 1 3.7187 -1.6225 2.2064 17 6 4.2730 0.3383 1.4982 18 6 2.0393 -0.7230 1.2275 19 8 1.2788 -1.0810 2.0945 20 1 -0.3633 0.5061 0.8944 21 1 -0.3634 -1.0276 -0.0089 22 1 -0.3634 0.5216 -0.8855 23 1 1.5398 -1.6943 -1.3383 24 1 1.8555 -0.1292 -2.1306 25 1 6.5674 -2.8196 -2.0364 26 1 5.0804 -1.7250 0.0394 27 1 3.5982 -2.7128 0.0466 28 1 3.9259 0.8479 2.3971 29 1 5.3423 0.1443 1.5805 30 1 4.0836 0.9671 0.6280 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575526691.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:12 Heat of formation + Delta-G solvation = -29.817973 kcal Electronic energy + Delta-G solvation = -13203.973477 eV Core-core repulsion = 10999.497983 eV Total energy + Delta-G solvation = -2204.475495 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44151 -36.24250 -33.14514 -32.59978 -30.31070 -26.04073 -25.90669 -24.08918 -21.59092 -20.98214 -17.96709 -16.69671 -15.36612 -14.87471 -14.71563 -14.17393 -13.77794 -13.57545 -13.03766 -12.33992 -11.86750 -11.79497 -11.77454 -11.30027 -11.02245 -10.99958 -10.90515 -10.69238 -10.37366 -10.25414 -9.93416 -9.73033 -8.70424 -8.46817 -6.81948 -5.90551 -3.35083 2.60613 3.31615 3.40318 3.41922 4.39508 4.70616 5.22520 5.29512 5.41603 5.51540 5.75993 5.81606 5.89368 6.03200 6.12212 6.27169 6.36555 6.44122 6.51096 6.57346 6.65011 6.77599 6.88883 7.07284 7.48642 7.70752 8.15260 8.33433 9.07665 9.70333 10.25714 11.17857 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049612 B = 0.012105 C = 0.011166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.244895 B = 2312.625915 C = 2506.944834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.161 4.161 3 H 0.098 0.902 4 C 0.156 3.844 5 N -0.586 5.586 6 C -0.258 4.258 7 H 0.069 0.931 8 C 0.007 3.993 9 N -0.899 5.899 10 Si 0.902 3.098 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.290 1.290 14 C 0.175 3.825 15 C -0.166 4.166 16 H 0.077 0.923 17 C -0.124 4.124 18 C 0.378 3.622 19 O -0.485 6.485 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.256 0.744 26 H 0.103 0.897 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 4.510 3.038 6.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.182 4.182 3 H 0.116 0.884 4 C 0.029 3.971 5 N -0.307 5.307 6 C -0.387 4.387 7 H 0.087 0.913 8 C -0.192 4.192 9 N -0.543 5.543 10 Si 0.731 3.269 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.217 1.217 14 C 0.049 3.951 15 C -0.187 4.187 16 H 0.095 0.905 17 C -0.181 4.181 18 C 0.256 3.744 19 O -0.361 6.361 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.229 4.209 3.435 6.885 hybrid contribution 0.852 0.331 -0.460 1.023 sum -3.377 4.540 2.975 6.393 Atomic orbital electron populations 1.21582 0.94412 1.01996 1.01169 1.22455 0.96226 1.01781 0.97767 0.88381 1.20946 0.86040 0.96752 0.93408 1.44081 0.99855 1.64085 1.22723 1.19211 0.98319 1.05600 1.15587 0.91314 1.25078 1.00103 0.94847 0.99215 1.70028 1.25083 1.09070 1.50079 0.86239 0.82341 0.79315 0.78959 1.20101 1.21433 1.21653 1.20939 1.01633 0.91333 0.81223 1.22657 0.93482 0.99801 1.02772 0.90460 1.21540 0.99892 0.95752 1.00907 1.24906 0.91138 0.73580 0.84822 1.90279 1.60751 1.43896 1.41138 0.92868 0.92692 0.92439 0.95645 0.91478 0.93432 0.87917 0.95838 0.94401 0.92108 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.57 37.16 0.32 -1.74 16 2 C -0.16 -2.88 2.87 -91.28 -0.26 -3.14 16 3 H 0.10 1.67 7.73 -51.92 -0.40 1.27 16 4 C 0.16 3.15 5.84 -3.64 -0.02 3.13 16 5 N -0.59 -13.90 2.58 -172.18 -0.44 -14.35 16 6 C -0.26 -6.64 9.54 -15.06 -0.14 -6.78 16 7 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 8 C 0.01 0.18 4.88 -17.43 -0.09 0.09 16 9 N -0.90 -25.01 11.23 55.49 0.62 -24.39 16 10 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 14 C 0.18 4.05 4.80 -3.64 -0.02 4.04 16 15 C -0.17 -3.26 3.20 -91.27 -0.29 -3.56 16 16 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 17 C -0.12 -2.20 9.02 37.16 0.34 -1.86 16 18 C 0.38 7.45 5.90 -28.45 -0.17 7.28 16 19 O -0.48 -10.36 16.86 6.00 0.10 -10.26 16 20 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 24 H 0.07 1.29 7.92 -51.93 -0.41 0.88 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.10 2.60 5.89 -51.93 -0.31 2.30 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.34 7.30 -51.93 -0.38 0.96 16 LS Contribution 246.29 15.07 3.71 3.71 Total: -1.00 -28.22 246.29 -5.80 -34.02 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.42 Total: -1.87 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.34 Total: -2.54 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.18 Total: -38.74 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.10 Total: -10.26 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.22 -5.80 -34.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575526691.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.202 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds