Wall clock time and date at job start Mon Mar 30 2020 02:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.67300 * 2 1 4 4 C 1.53398 * 109.67393 * 239.46372 * 2 1 3 5 5 N 1.46860 * 108.77633 * 190.84248 * 4 2 1 6 6 C 1.36938 * 120.38071 * 237.60036 * 5 4 2 7 7 H 1.08003 * 120.00218 * 29.09828 * 6 5 4 8 8 C 1.38809 * 119.99811 * 209.10012 * 6 5 4 9 9 N 1.31620 * 120.00242 * 17.95042 * 8 6 5 10 10 Si 1.86797 * 119.99844 * 197.94504 * 8 6 5 11 11 H 1.48506 * 109.47486 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47303 * 120.00155 * 10 8 6 13 13 H 1.48504 * 109.47444 * 240.00050 * 10 8 6 14 14 C 1.46852 * 119.23972 * 57.61798 * 5 4 2 15 15 C 1.53403 * 108.77696 * 302.38212 * 14 5 4 16 16 H 1.09002 * 109.67555 * 169.15308 * 15 14 5 17 17 C 1.52998 * 109.67195 * 289.69139 * 15 14 5 18 18 C 1.51291 * 109.67443 * 120.49759 * 2 1 3 19 19 O 1.20763 * 120.80758 * 352.71396 * 18 2 1 20 20 H 1.09001 * 109.47164 * 299.50373 * 1 2 3 21 21 H 1.08998 * 109.47296 * 179.50525 * 1 2 3 22 22 H 1.09005 * 109.47155 * 59.50011 * 1 2 3 23 23 H 1.08994 * 109.58553 * 310.62973 * 4 2 1 24 24 H 1.08998 * 109.58698 * 71.05507 * 4 2 1 25 25 H 0.97001 * 119.99969 * 180.02562 * 9 8 6 26 26 H 1.08996 * 109.58728 * 182.59391 * 14 5 4 27 27 H 1.09002 * 109.70382 * 62.23713 * 14 5 4 28 28 H 1.09004 * 109.46781 * 178.96466 * 17 15 14 29 29 H 1.08994 * 109.46878 * 298.96446 * 17 15 14 30 30 H 1.09004 * 109.47359 * 58.96568 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0464 -0.7339 -1.2441 5 7 3.4914 -0.9517 -1.0986 6 6 4.3629 -0.4665 -2.0368 7 1 4.1144 0.4238 -2.5954 8 6 5.5657 -1.1191 -2.2700 9 7 5.7268 -2.3638 -1.8738 10 14 6.9556 -0.2306 -3.1464 11 1 6.5249 1.1495 -3.4858 12 1 8.1443 -0.1732 -2.2582 13 1 7.3030 -0.9615 -4.3916 14 6 3.9911 -1.6962 0.0644 15 6 3.5247 -0.9870 1.3423 16 1 3.7187 -1.6225 2.2064 17 6 4.2730 0.3383 1.4982 18 6 2.0393 -0.7230 1.2275 19 8 1.2788 -1.0810 2.0945 20 1 -0.3633 0.5061 0.8944 21 1 -0.3634 -1.0276 -0.0089 22 1 -0.3634 0.5216 -0.8855 23 1 1.5398 -1.6943 -1.3383 24 1 1.8555 -0.1292 -2.1306 25 1 6.5674 -2.8196 -2.0364 26 1 5.0804 -1.7250 0.0394 27 1 3.5982 -2.7128 0.0466 28 1 3.9259 0.8479 2.3971 29 1 5.3423 0.1443 1.5805 30 1 4.0836 0.9671 0.6280 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575526691.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:11 Heat of formation + Delta-G solvation = -45.921278 kcal Electronic energy + Delta-G solvation = -13204.671769 eV Core-core repulsion = 10999.497983 eV Total energy + Delta-G solvation = -2205.173786 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.05640 -37.99242 -34.75406 -34.31551 -32.10151 -27.77081 -27.47764 -25.76000 -23.27203 -22.64428 -19.63805 -18.51127 -17.07296 -16.57171 -16.38512 -15.80151 -15.47057 -15.26160 -14.84200 -13.82648 -13.40592 -13.31539 -13.20603 -12.94212 -12.76120 -12.63555 -12.56122 -12.32419 -12.11857 -11.85405 -11.73691 -11.45361 -10.57846 -10.16478 -8.74492 -7.88898 -5.36018 1.01428 1.50226 1.53709 1.62891 2.52039 3.15899 3.29283 3.57017 3.91693 4.05681 4.17582 4.31528 4.40386 4.56833 4.77156 4.81426 4.97412 4.99387 5.03469 5.07929 5.15200 5.21825 5.33603 5.44015 5.57530 5.68922 6.38114 6.57292 7.11296 7.79257 8.31842 9.18493 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049612 B = 0.012105 C = 0.011166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.244895 B = 2312.625915 C = 2506.944834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.151 4.151 3 H 0.114 0.886 4 C 0.154 3.846 5 N -0.601 5.601 6 C -0.259 4.259 7 H 0.076 0.924 8 C -0.044 4.044 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.291 1.291 13 H -0.297 1.297 14 C 0.184 3.816 15 C -0.162 4.162 16 H 0.082 0.918 17 C -0.116 4.116 18 C 0.377 3.623 19 O -0.500 6.500 20 H 0.059 0.941 21 H 0.045 0.955 22 H 0.083 0.917 23 H 0.016 0.984 24 H 0.080 0.920 25 H 0.251 0.749 26 H 0.078 0.922 27 H -0.003 1.003 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.624 6.232 3.066 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.172 4.172 3 H 0.132 0.868 4 C 0.028 3.972 5 N -0.322 5.322 6 C -0.389 4.389 7 H 0.094 0.906 8 C -0.240 4.240 9 N -0.580 5.580 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.218 1.218 13 H -0.224 1.224 14 C 0.057 3.943 15 C -0.183 4.183 16 H 0.101 0.899 17 C -0.173 4.173 18 C 0.256 3.744 19 O -0.377 6.377 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.102 0.898 23 H 0.034 0.966 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.015 0.985 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.889 5.954 3.465 8.447 hybrid contribution 0.993 -0.236 -0.462 1.121 sum -3.896 5.718 3.002 7.543 Atomic orbital electron populations 1.21566 0.92219 1.02001 1.02838 1.22372 0.97948 1.01712 0.95118 0.86825 1.21061 0.84016 0.96871 0.95247 1.44276 1.01236 1.64042 1.22676 1.19539 0.98613 1.05460 1.15257 0.90607 1.25779 1.02269 0.95366 1.00541 1.70171 1.25307 1.10550 1.51999 0.85267 0.79448 0.78712 0.77351 1.18660 1.21784 1.22396 1.20666 0.99980 0.90609 0.83003 1.22574 0.94131 1.00685 1.00912 0.89935 1.21476 0.99676 0.94453 1.01714 1.25121 0.90796 0.73187 0.85251 1.90279 1.60908 1.44549 1.41965 0.92172 0.93572 0.89802 0.96554 0.90198 0.93963 0.90404 0.98526 0.91870 0.92139 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.57 71.98 0.62 -2.95 16 2 C -0.15 -5.01 2.87 -11.22 -0.03 -5.04 16 3 H 0.11 3.48 7.73 -2.38 -0.02 3.46 16 4 C 0.15 6.00 5.84 86.44 0.50 6.51 16 5 N -0.60 -28.17 2.58 -698.66 -1.80 -29.97 16 6 C -0.26 -13.12 9.54 84.03 0.80 -12.32 16 7 H 0.08 3.68 7.89 -2.91 -0.02 3.66 16 8 C -0.04 -2.30 4.88 84.86 0.41 -1.89 16 9 N -0.93 -52.94 11.23 21.65 0.24 -52.70 16 10 Si 0.96 42.40 29.59 68.60 2.03 44.42 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.30 -13.29 7.11 99.48 0.71 -12.59 16 14 C 0.18 8.60 4.80 86.45 0.42 9.02 16 15 C -0.16 -6.22 3.20 -11.21 -0.04 -6.26 16 16 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 17 C -0.12 -3.90 9.02 71.98 0.65 -3.25 16 18 C 0.38 14.25 5.90 29.48 0.17 14.42 16 19 O -0.50 -20.51 16.86 -1.46 -0.02 -20.54 16 20 H 0.06 1.61 8.06 -2.39 -0.02 1.59 16 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 24 H 0.08 2.89 7.92 -2.39 -0.02 2.87 16 25 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.08 4.04 5.89 -2.39 -0.01 4.03 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.24 7.30 -2.38 -0.02 2.22 16 Total: -1.00 -59.10 246.29 5.06 -54.04 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.10 Total: 6.51 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 3.51 Total: -1.76 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.56 Total: -82.67 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.02 Total: -20.54 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -59.10 5.06 -54.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575526691.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.116 kcal (2) G-P(sol) polarization free energy of solvation -59.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds