Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.66821 * 2 1 4 4 C 1.53395 * 109.67726 * 120.49910 * 2 1 3 5 5 N 1.46856 * 108.77265 * 70.34405 * 4 2 1 6 6 C 1.36943 * 120.38069 * 237.62152 * 5 4 2 7 7 H 1.07997 * 119.99584 * 150.60902 * 6 5 4 8 8 C 1.38804 * 119.99962 * 330.60918 * 6 5 4 9 9 N 1.31622 * 120.00247 * 342.39732 * 8 6 5 10 10 Si 1.86810 * 119.99877 * 162.39685 * 8 6 5 11 11 H 1.48498 * 109.46844 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47269 * 120.00142 * 10 8 6 13 13 H 1.48497 * 109.46750 * 239.99912 * 10 8 6 14 14 C 1.46857 * 119.23973 * 57.90067 * 5 4 2 15 15 C 1.53899 * 108.50798 * 302.07213 * 14 5 4 16 16 H 1.09004 * 109.80447 * 289.86226 * 15 14 5 17 17 C 1.52994 * 109.62068 * 169.31343 * 15 14 5 18 18 C 1.51288 * 108.37089 * 49.63881 * 15 14 5 19 19 O 1.20771 * 120.80199 * 126.88883 * 18 15 14 20 20 H 1.08998 * 109.46840 * 299.49744 * 1 2 3 21 21 H 1.08995 * 109.46998 * 59.50160 * 1 2 3 22 22 H 1.08997 * 109.46978 * 179.49841 * 1 2 3 23 23 H 1.08997 * 109.58697 * 310.56102 * 4 2 1 24 24 H 1.08994 * 109.70544 * 190.20558 * 4 2 1 25 25 H 0.97001 * 120.00021 * 180.02562 * 9 8 6 26 26 H 1.09005 * 109.58518 * 61.88643 * 14 5 4 27 27 H 1.08994 * 109.59209 * 182.31204 * 14 5 4 28 28 H 1.09003 * 109.47254 * 301.12884 * 17 15 14 29 29 H 1.09001 * 109.47317 * 61.12784 * 17 15 14 30 30 H 1.08998 * 109.47478 * 181.13011 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0465 -0.7331 1.2445 5 7 1.7653 -2.1671 1.0991 6 6 1.0141 -2.8241 2.0368 7 1 0.4180 -3.6777 1.7498 8 6 1.0189 -2.3930 3.3562 9 7 1.9777 -1.6003 3.7861 10 14 -0.3355 -2.9378 4.5218 11 1 -1.2863 -3.8196 3.7981 12 1 0.2608 -3.6811 5.6607 13 1 -1.0580 -1.7454 5.0329 14 6 2.3040 -2.8898 -0.0603 15 6 1.7889 -2.2107 -1.3417 16 1 0.7204 -2.3949 -1.4534 17 6 2.5371 -2.7676 -2.5545 18 6 2.0401 -0.7232 -1.2271 19 8 2.6338 -0.1277 -2.0939 20 1 -0.3633 0.5060 0.8945 21 1 -0.3633 0.5215 -0.8854 22 1 -0.3633 -1.0276 -0.0090 23 1 1.5408 -0.3496 2.1307 24 1 3.1212 -0.5795 1.3420 25 1 1.9812 -1.2993 4.7083 26 1 3.3933 -2.8560 -0.0380 27 1 1.9679 -3.9263 -0.0333 28 1 3.6059 -2.5896 -2.4353 29 1 2.3539 -3.8391 -2.6339 30 1 2.1847 -2.2708 -3.4584 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575526694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = -29.938581 kcal Electronic energy + Delta-G solvation = -13202.176026 eV Core-core repulsion = 10997.695302 eV Total energy + Delta-G solvation = -2204.480724 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42839 -36.23331 -33.11834 -32.60047 -30.31113 -26.03859 -25.89656 -24.09065 -21.59158 -20.97323 -17.96582 -16.69564 -15.35791 -14.87370 -14.70863 -14.17360 -13.77718 -13.57139 -13.03769 -12.33890 -11.86456 -11.79081 -11.77041 -11.29900 -11.01870 -11.00151 -10.90276 -10.69060 -10.37276 -10.25600 -9.93789 -9.72642 -8.70386 -8.46842 -6.81229 -5.90534 -3.35698 2.60771 3.31546 3.40207 3.41845 4.39483 4.71075 5.23075 5.29508 5.41838 5.51357 5.75949 5.81451 5.89556 6.03468 6.12423 6.27036 6.36770 6.44234 6.51185 6.57580 6.65119 6.77734 6.88852 7.07450 7.48695 7.70816 8.15545 8.33757 9.07719 9.70206 10.25830 11.17754 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049603 B = 0.012097 C = 0.011158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.350828 B = 2313.985293 C = 2508.783678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.166 4.166 3 H 0.077 0.923 4 C 0.175 3.825 5 N -0.587 5.587 6 C -0.258 4.258 7 H 0.069 0.931 8 C 0.007 3.993 9 N -0.899 5.899 10 Si 0.902 3.098 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.288 1.288 14 C 0.156 3.844 15 C -0.161 4.161 16 H 0.098 0.902 17 C -0.134 4.134 18 C 0.378 3.622 19 O -0.485 6.485 20 H 0.060 0.940 21 H 0.037 0.963 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.024 0.976 25 H 0.256 0.744 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 -0.183 -6.330 6.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 H 0.095 0.905 4 C 0.049 3.951 5 N -0.308 5.308 6 C -0.387 4.387 7 H 0.087 0.913 8 C -0.192 4.192 9 N -0.543 5.543 10 Si 0.732 3.268 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.214 1.214 14 C 0.029 3.971 15 C -0.182 4.182 16 H 0.116 0.884 17 C -0.192 4.192 18 C 0.256 3.744 19 O -0.361 6.361 20 H 0.079 0.921 21 H 0.056 0.944 22 H 0.089 0.911 23 H 0.121 0.879 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.924 0.173 -6.586 6.864 hybrid contribution -0.650 -0.201 0.767 1.025 sum -2.574 -0.028 -5.820 6.364 Atomic orbital electron populations 1.21536 0.93101 1.02926 1.00498 1.22649 0.98160 0.99997 0.97881 0.90471 1.20938 0.97489 0.83011 0.93689 1.44097 1.59384 1.03996 1.23280 1.19209 1.19041 1.13119 0.87367 0.91330 1.25093 0.97487 0.99932 0.96705 1.70024 1.30609 1.37810 1.15832 0.86235 0.81732 0.78039 0.80837 1.20095 1.21645 1.21432 1.21048 0.95735 0.95348 0.85006 1.22542 1.02281 0.94781 0.98642 0.88376 1.21581 1.00476 1.00138 0.96976 1.24904 0.73529 0.90991 0.85018 1.90281 1.33883 1.70774 1.41149 0.92084 0.94398 0.91099 0.87940 0.95822 0.93426 0.95605 0.91457 0.92700 0.92447 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.03 37.16 0.34 -1.86 16 2 C -0.17 -3.26 3.20 -91.27 -0.29 -3.55 16 3 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 4 C 0.18 4.05 4.80 -3.64 -0.02 4.03 16 5 N -0.59 -13.90 2.59 -171.88 -0.44 -14.35 16 6 C -0.26 -6.64 9.54 -15.06 -0.14 -6.78 16 7 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 8 C 0.01 0.19 4.89 -17.43 -0.09 0.10 16 9 N -0.90 -25.01 11.23 55.49 0.62 -24.39 16 10 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.16 3.15 5.87 -3.38 -0.02 3.13 16 15 C -0.16 -2.88 2.88 -91.02 -0.26 -3.14 16 16 H 0.10 1.67 7.70 -51.93 -0.40 1.27 16 17 C -0.13 -2.06 8.58 37.15 0.32 -1.74 16 18 C 0.38 7.45 5.90 -28.45 -0.17 7.28 16 19 O -0.49 -10.37 16.86 5.99 0.10 -10.27 16 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 1.32 7.28 -51.93 -0.38 0.95 16 23 H 0.10 2.60 5.90 -51.93 -0.31 2.29 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.07 1.29 7.92 -51.93 -0.41 0.88 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.79 8.06 -51.93 -0.42 0.38 16 LS Contribution 246.31 15.07 3.71 3.71 Total: -1.00 -28.22 246.31 -5.79 -34.01 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.42 Total: -1.86 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.33 Total: -2.53 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.18 Total: -38.74 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.10 Total: -10.27 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.22 -5.79 -34.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575526694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.073 kcal (2) G-P(sol) polarization free energy of solvation -28.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds