Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.66821 * 2 1 4 4 C 1.53395 * 109.67726 * 120.49910 * 2 1 3 5 5 N 1.46856 * 108.77265 * 70.34405 * 4 2 1 6 6 C 1.36943 * 120.38069 * 237.62152 * 5 4 2 7 7 H 1.07997 * 119.99584 * 150.60902 * 6 5 4 8 8 C 1.38804 * 119.99962 * 330.60918 * 6 5 4 9 9 N 1.31622 * 120.00247 * 342.39732 * 8 6 5 10 10 Si 1.86810 * 119.99877 * 162.39685 * 8 6 5 11 11 H 1.48498 * 109.46844 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47269 * 120.00142 * 10 8 6 13 13 H 1.48497 * 109.46750 * 239.99912 * 10 8 6 14 14 C 1.46857 * 119.23973 * 57.90067 * 5 4 2 15 15 C 1.53899 * 108.50798 * 302.07213 * 14 5 4 16 16 H 1.09004 * 109.80447 * 289.86226 * 15 14 5 17 17 C 1.52994 * 109.62068 * 169.31343 * 15 14 5 18 18 C 1.51288 * 108.37089 * 49.63881 * 15 14 5 19 19 O 1.20771 * 120.80199 * 126.88883 * 18 15 14 20 20 H 1.08998 * 109.46840 * 299.49744 * 1 2 3 21 21 H 1.08995 * 109.46998 * 59.50160 * 1 2 3 22 22 H 1.08997 * 109.46978 * 179.49841 * 1 2 3 23 23 H 1.08997 * 109.58697 * 310.56102 * 4 2 1 24 24 H 1.08994 * 109.70544 * 190.20558 * 4 2 1 25 25 H 0.97001 * 120.00021 * 180.02562 * 9 8 6 26 26 H 1.09005 * 109.58518 * 61.88643 * 14 5 4 27 27 H 1.08994 * 109.59209 * 182.31204 * 14 5 4 28 28 H 1.09003 * 109.47254 * 301.12884 * 17 15 14 29 29 H 1.09001 * 109.47317 * 61.12784 * 17 15 14 30 30 H 1.08998 * 109.47478 * 181.13011 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0465 -0.7331 1.2445 5 7 1.7653 -2.1671 1.0991 6 6 1.0141 -2.8241 2.0368 7 1 0.4180 -3.6777 1.7498 8 6 1.0189 -2.3930 3.3562 9 7 1.9777 -1.6003 3.7861 10 14 -0.3355 -2.9378 4.5218 11 1 -1.2863 -3.8196 3.7981 12 1 0.2608 -3.6811 5.6607 13 1 -1.0580 -1.7454 5.0329 14 6 2.3040 -2.8898 -0.0603 15 6 1.7889 -2.2107 -1.3417 16 1 0.7204 -2.3949 -1.4534 17 6 2.5371 -2.7676 -2.5545 18 6 2.0401 -0.7232 -1.2271 19 8 2.6338 -0.1277 -2.0939 20 1 -0.3633 0.5060 0.8945 21 1 -0.3633 0.5215 -0.8854 22 1 -0.3633 -1.0276 -0.0090 23 1 1.5408 -0.3496 2.1307 24 1 3.1212 -0.5795 1.3420 25 1 1.9812 -1.2993 4.7083 26 1 3.3933 -2.8560 -0.0380 27 1 1.9679 -3.9263 -0.0333 28 1 3.6059 -2.5896 -2.4353 29 1 2.3539 -3.8391 -2.6339 30 1 2.1847 -2.2708 -3.4584 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575526694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = -46.038327 kcal Electronic energy + Delta-G solvation = -13202.874163 eV Core-core repulsion = 10997.695302 eV Total energy + Delta-G solvation = -2205.178862 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04423 -37.98443 -34.73118 -34.31174 -32.10130 -27.76918 -27.46989 -25.76101 -23.27094 -22.63788 -19.63666 -18.51094 -17.06677 -16.56918 -16.38026 -15.79838 -15.47131 -15.25735 -14.84170 -13.82646 -13.40253 -13.31223 -13.20445 -12.94010 -12.76049 -12.63252 -12.56600 -12.32108 -12.11671 -11.85810 -11.73572 -11.45088 -10.57849 -10.16535 -8.73745 -7.88808 -5.36621 1.01500 1.50214 1.53649 1.62872 2.51995 3.16319 3.29400 3.57183 3.92041 4.05297 4.17506 4.31150 4.40676 4.56876 4.77185 4.81543 4.97630 4.99520 5.03449 5.07850 5.15442 5.22008 5.33662 5.44049 5.57608 5.68949 6.38428 6.57490 7.11383 7.79160 8.31962 9.18422 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049603 B = 0.012097 C = 0.011158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.350828 B = 2313.985293 C = 2508.783678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.162 4.162 3 H 0.082 0.918 4 C 0.184 3.816 5 N -0.601 5.601 6 C -0.259 4.259 7 H 0.076 0.924 8 C -0.044 4.044 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.262 1.262 12 H -0.297 1.297 13 H -0.291 1.291 14 C 0.154 3.846 15 C -0.151 4.151 16 H 0.114 0.886 17 C -0.129 4.129 18 C 0.377 3.623 19 O -0.500 6.500 20 H 0.059 0.941 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.078 0.922 24 H -0.003 1.003 25 H 0.251 0.749 26 H 0.017 0.983 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -0.926 -7.522 8.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.183 4.183 3 H 0.101 0.899 4 C 0.057 3.943 5 N -0.322 5.322 6 C -0.389 4.389 7 H 0.094 0.906 8 C -0.239 4.239 9 N -0.580 5.580 10 Si 0.792 3.208 11 H -0.186 1.186 12 H -0.224 1.224 13 H -0.218 1.218 14 C 0.028 3.972 15 C -0.172 4.172 16 H 0.132 0.868 17 C -0.186 4.186 18 C 0.256 3.744 19 O -0.377 6.377 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.115 -0.585 -7.809 8.428 hybrid contribution -0.228 0.025 1.102 1.125 sum -3.343 -0.560 -6.707 7.515 Atomic orbital electron populations 1.21473 0.91291 1.02812 1.01717 1.22567 0.99642 0.99797 0.96268 0.89946 1.20667 0.95618 0.83532 0.94434 1.44293 1.59647 1.04344 1.23956 1.19538 1.18704 1.12897 0.87745 0.90617 1.25795 0.99309 1.00571 0.98262 1.70168 1.32446 1.39578 1.15847 0.85263 0.79382 0.77443 0.78673 1.18647 1.22391 1.21794 1.21164 0.95206 0.96023 0.84798 1.22458 1.03454 0.92950 0.98288 0.86823 1.21564 0.99490 1.01795 0.95787 1.25119 0.72769 0.91975 0.84487 1.90281 1.34376 1.71327 1.41742 0.92161 0.91862 0.91836 0.90428 0.98518 0.93963 0.96518 0.90179 0.93579 0.89810 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 9.03 71.98 0.65 -3.24 16 2 C -0.16 -6.21 3.20 -11.22 -0.04 -6.25 16 3 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 4 C 0.18 8.61 4.80 86.44 0.41 9.02 16 5 N -0.60 -28.17 2.59 -697.70 -1.81 -29.97 16 6 C -0.26 -13.13 9.54 84.03 0.80 -12.32 16 7 H 0.08 3.68 7.89 -2.91 -0.02 3.65 16 8 C -0.04 -2.29 4.89 84.86 0.41 -1.88 16 9 N -0.93 -52.95 11.23 21.65 0.24 -52.70 16 10 Si 0.96 42.39 29.59 68.60 2.03 44.42 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 14 C 0.15 6.01 5.87 86.61 0.51 6.52 16 15 C -0.15 -5.01 2.88 -11.05 -0.03 -5.04 16 16 H 0.11 3.48 7.70 -2.38 -0.02 3.47 16 17 C -0.13 -3.57 8.58 71.98 0.62 -2.96 16 18 C 0.38 14.25 5.90 29.48 0.17 14.43 16 19 O -0.50 -20.53 16.86 -1.48 -0.02 -20.56 16 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.06 2.23 7.28 -2.39 -0.02 2.21 16 23 H 0.08 4.03 5.90 -2.39 -0.01 4.01 16 24 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.02 0.68 8.12 -2.38 -0.02 0.67 16 27 H 0.08 2.90 7.92 -2.39 -0.02 2.88 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.60 8.06 -2.39 -0.02 1.58 16 Total: -1.00 -59.08 246.31 5.06 -54.02 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.10 Total: 6.51 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 3.51 Total: -1.72 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.56 Total: -82.68 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.02 Total: -20.56 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -59.08 5.06 -54.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575526694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.986 kcal (2) G-P(sol) polarization free energy of solvation -59.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds