Wall clock time and date at job start Mon Mar 30 2020 02:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.63326 * 2 1 4 4 C 1.53065 * 109.79991 * 239.49625 * 2 1 3 5 5 C 1.51793 * 110.74234 * 155.28473 * 4 2 1 6 6 C 1.51772 * 113.80876 * 66.81466 * 5 4 2 7 7 C 1.53499 * 110.81971 * 292.91973 * 6 5 4 8 8 N 1.47191 * 108.37629 * 86.59597 * 7 6 5 9 9 C 1.37097 * 119.79003 * 108.06448 * 8 7 6 10 10 H 1.07993 * 120.00100 * 212.06618 * 9 8 7 11 11 C 1.38951 * 119.99769 * 32.05685 * 9 8 7 12 12 N 1.31420 * 119.99820 * 25.54155 * 11 9 8 13 13 Si 1.86798 * 120.00116 * 205.25865 * 11 9 8 14 14 H 1.48498 * 109.47146 * 90.00204 * 13 11 9 15 15 H 1.48502 * 109.47200 * 210.00545 * 13 11 9 16 16 H 1.48501 * 109.47116 * 330.00770 * 13 11 9 17 17 C 1.33369 * 120.42450 * 287.78468 * 8 7 6 18 18 O 1.21291 * 119.89342 * 180.56013 * 17 8 7 19 19 H 1.09000 * 109.47203 * 299.60669 * 1 2 3 20 20 H 1.09002 * 109.47229 * 59.60182 * 1 2 3 21 21 H 1.08997 * 109.47583 * 179.60299 * 1 2 3 22 22 H 1.09002 * 109.22137 * 275.61537 * 4 2 1 23 23 H 1.08999 * 109.21575 * 35.00398 * 4 2 1 24 24 H 1.09000 * 108.61260 * 187.92988 * 5 4 2 25 25 H 1.08999 * 108.61717 * 305.68780 * 5 4 2 26 26 H 1.08993 * 109.20083 * 53.35596 * 6 5 4 27 27 H 1.09005 * 109.19423 * 172.63595 * 6 5 4 28 28 H 1.09002 * 109.72755 * 326.93940 * 7 6 5 29 29 H 1.08998 * 109.76547 * 206.27070 * 7 6 5 30 30 H 0.96995 * 119.99990 * 5.19517 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0485 -0.7310 -1.2408 5 6 3.4438 -0.2547 -1.6016 6 6 4.5015 -0.6255 -0.5782 7 6 4.2703 0.1238 0.7414 8 7 3.3294 -0.6577 1.5602 9 6 3.7816 -1.3197 2.6724 10 1 3.3191 -2.2479 2.9736 11 6 4.8351 -0.7963 3.4119 12 7 5.0730 0.4961 3.3930 13 14 5.9084 -1.9286 4.4391 14 1 7.0493 -2.4083 3.6185 15 1 6.4238 -1.1871 5.6181 16 1 5.1054 -3.0906 4.8975 17 6 2.0388 -0.7216 1.2302 18 8 1.2700 -1.3602 1.9175 19 1 -0.3633 0.5077 0.8935 20 1 -0.3634 0.5200 -0.8864 21 1 -0.3634 -1.0276 -0.0071 22 1 2.0753 -1.8023 -1.0412 23 1 1.3767 -0.5386 -2.0774 24 1 3.7220 -0.6883 -2.5621 25 1 3.4252 0.8302 -1.7054 26 1 4.4615 -1.6991 -0.3943 27 1 5.4853 -0.3661 -0.9694 28 1 3.8474 1.1074 0.5367 29 1 5.2151 0.2329 1.2738 30 1 4.4693 1.0935 2.9245 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248605.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:31 Heat of formation + Delta-G solvation = -69.917860 kcal Electronic energy + Delta-G solvation = -13314.573173 eV Core-core repulsion = 11108.358817 eV Total energy + Delta-G solvation = -2206.214356 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21620 -37.45894 -36.73742 -33.65354 -32.72868 -29.35954 -27.27784 -24.99029 -24.19138 -21.57070 -20.40510 -19.09022 -18.13909 -16.90794 -16.18731 -15.64475 -15.29847 -15.00621 -14.80123 -14.30753 -14.06607 -13.53524 -13.08981 -12.88974 -12.72509 -12.60408 -12.06577 -12.01393 -11.96557 -11.64156 -11.56379 -11.42255 -10.85373 -10.24488 -9.76834 -8.80021 -6.13561 1.49539 1.52365 1.79514 2.04915 2.38828 2.87917 3.05718 3.68219 3.81213 3.96606 3.99917 4.29477 4.39953 4.52476 4.53592 4.72394 4.84165 4.91518 5.00058 5.07705 5.14724 5.21665 5.26684 5.33413 5.44975 5.78375 5.88675 6.64297 6.90576 7.42519 7.96760 8.45230 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044892 B = 0.013285 C = 0.011506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.564765 B = 2107.188813 C = 2432.933210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 H 0.095 0.905 4 C -0.101 4.101 5 C -0.113 4.113 6 C -0.129 4.129 7 C 0.097 3.903 8 N -0.461 5.461 9 C -0.428 4.428 10 H 0.049 0.951 11 C -0.025 4.025 12 N -0.888 5.888 13 Si 1.124 2.876 14 H -0.260 1.260 15 H -0.276 1.276 16 H -0.283 1.283 17 C 0.439 3.561 18 O -0.641 6.641 19 H 0.036 0.964 20 H 0.096 0.904 21 H 0.043 0.957 22 H 0.036 0.964 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 1.551 -11.181 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.122 4.122 3 H 0.113 0.887 4 C -0.139 4.139 5 C -0.150 4.150 6 C -0.167 4.167 7 C -0.026 4.026 8 N -0.180 5.180 9 C -0.556 4.556 10 H 0.067 0.933 11 C -0.227 4.227 12 N -0.523 5.523 13 Si 0.944 3.056 14 H -0.185 1.185 15 H -0.202 1.202 16 H -0.208 1.208 17 C 0.229 3.771 18 O -0.529 6.529 19 H 0.056 0.944 20 H 0.115 0.885 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.123 0.877 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.110 1.227 -9.892 10.029 hybrid contribution -1.549 -0.055 -0.372 1.594 sum -0.439 1.172 -10.263 10.339 Atomic orbital electron populations 1.21532 0.92508 1.01730 1.02014 1.21495 0.97957 0.99889 0.92869 0.88718 1.21313 0.97962 0.98535 0.96057 1.21146 0.92754 1.02489 0.98623 1.21799 1.00745 0.99625 0.94515 1.22080 0.94615 0.94038 0.91889 1.43819 1.06275 1.44587 1.23303 1.20315 1.21145 1.06608 1.07511 0.93296 1.27734 0.98779 0.98494 0.97693 1.70847 1.40267 1.02741 1.38432 0.82806 0.74711 0.72967 0.75164 1.18467 1.20163 1.20822 1.21299 0.82024 0.84854 0.88918 1.90452 1.56694 1.48478 1.57274 0.94446 0.88493 0.93780 0.94529 0.87711 0.89319 0.90165 0.93929 0.89103 0.91312 0.90766 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 8.46 71.98 0.61 -3.35 16 2 C -0.10 -3.70 2.42 -11.29 -0.03 -3.72 16 3 H 0.09 3.16 6.76 -2.38 -0.02 3.15 16 4 C -0.10 -2.98 5.13 30.22 0.16 -2.82 16 5 C -0.11 -2.91 5.27 29.79 0.16 -2.76 16 6 C -0.13 -4.31 5.75 30.36 0.17 -4.14 16 7 C 0.10 4.15 4.51 86.42 0.39 4.54 16 8 N -0.46 -24.53 2.36 -634.05 -1.49 -26.03 16 9 C -0.43 -25.66 8.91 84.04 0.75 -24.91 16 10 H 0.05 3.22 7.66 -2.91 -0.02 3.20 16 11 C -0.02 -1.39 4.71 84.93 0.40 -0.99 16 12 N -0.89 -50.59 12.23 21.66 0.26 -50.33 16 13 Si 1.12 49.29 29.99 68.60 2.06 51.35 16 14 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 15 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 C 0.44 22.80 6.61 88.11 0.58 23.39 16 18 O -0.64 -39.38 15.74 -3.06 -0.05 -39.42 16 19 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.10 2.26 8.13 -2.39 -0.02 2.24 16 21 H 0.04 1.57 7.99 -2.39 -0.02 1.55 16 22 H 0.04 1.26 7.86 -2.39 -0.02 1.25 16 23 H 0.10 2.29 7.91 -2.39 -0.02 2.27 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 1.77 7.89 -2.39 -0.02 1.75 16 26 H 0.04 1.64 8.05 -2.39 -0.02 1.62 16 27 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.07 2.66 6.71 -2.39 -0.02 2.65 16 29 H 0.07 3.55 5.66 -2.39 -0.01 3.53 16 30 H 0.26 15.21 7.05 -92.71 -0.65 14.55 16 Total: -1.00 -73.30 239.50 5.20 -68.10 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.23 Total: 11.09 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 3.19 Total: -14.77 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.23 Total: -76.36 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.05 Total: -39.42 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.06 Total: 51.35 kcal Total: -73.30 5.20 -68.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248605.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.815 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds