Wall clock time and date at job start Mon Mar 30 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52488 * 1 3 3 H 1.10969 * 107.17982 * 2 1 4 4 C 1.52174 * 111.98201 * 117.59485 * 2 1 3 5 5 C 1.51225 * 113.64359 * 54.23538 * 4 2 1 6 6 C 1.51711 * 114.27057 * 65.53111 * 5 4 2 7 7 C 1.52857 * 110.78708 * 283.52810 * 6 5 4 8 8 N 1.46802 * 109.02617 * 85.34385 * 7 6 5 9 9 C 1.38077 * 118.04315 * 125.04692 * 8 7 6 10 10 H 1.07997 * 120.00191 * 211.66755 * 9 8 7 11 11 C 1.38952 * 119.99967 * 31.93566 * 9 8 7 12 12 N 1.31408 * 119.99999 * 16.17986 * 11 9 8 13 13 Si 1.86802 * 120.00119 * 196.18425 * 11 9 8 14 14 H 1.48501 * 109.46998 * 59.99831 * 13 11 9 15 15 H 1.48499 * 109.46891 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.46852 * 299.99865 * 13 11 9 17 17 C 1.32647 * 123.88357 * 306.35307 * 8 7 6 18 18 O 1.22690 * 117.24293 * 164.94133 * 17 8 7 19 19 H 1.09002 * 109.47317 * 177.29807 * 1 2 3 20 20 H 1.09004 * 109.46675 * 297.29068 * 1 2 3 21 21 H 1.08990 * 109.47421 * 57.28731 * 1 2 3 22 22 H 1.09640 * 108.96406 * 175.65803 * 4 2 1 23 23 H 1.09600 * 109.02710 * 292.68217 * 4 2 1 24 24 H 1.09773 * 107.93304 * 185.19500 * 5 4 2 25 25 H 1.08615 * 110.40581 * 302.01661 * 5 4 2 26 26 H 1.09007 * 109.25071 * 44.04654 * 6 5 4 27 27 H 1.09077 * 109.15348 * 163.24585 * 6 5 4 28 28 H 1.08596 * 110.32360 * 323.26773 * 7 6 5 29 29 H 1.09599 * 108.89559 * 204.19191 * 7 6 5 30 30 H 0.97002 * 120.00114 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5249 0.0000 0.0000 3 1 1.8526 1.0602 0.0000 4 6 2.0945 -0.6536 1.2506 5 6 1.5707 -2.0508 1.4969 6 6 1.9810 -3.0649 0.4458 7 6 1.1539 -2.8909 -0.8279 8 7 1.7800 -1.8629 -1.6684 9 6 2.1004 -2.1951 -2.9698 10 1 2.9557 -1.7412 -3.4480 11 6 1.3190 -3.1091 -3.6660 12 7 0.1190 -3.4162 -3.2273 13 14 1.9744 -3.9015 -5.2255 14 1 3.2158 -4.6546 -4.9140 15 1 0.9555 -4.8326 -5.7735 16 1 2.2731 -2.8478 -6.2282 17 6 2.0788 -0.6421 -1.2444 18 8 2.8434 0.0216 -1.9372 19 1 -0.3634 -1.0265 -0.0484 20 1 -0.3633 0.4712 0.9133 21 1 -0.3634 0.5553 -0.8646 22 1 3.1866 -0.6970 1.1641 23 1 1.8577 -0.0292 2.1196 24 1 1.9652 -2.3944 2.4620 25 1 0.4877 -2.0402 1.5789 26 1 3.0372 -2.9322 0.2113 27 1 1.8266 -4.0705 0.8392 28 1 0.1319 -2.6201 -0.5799 29 1 1.1407 -3.8404 -1.3750 30 1 -0.4267 -4.0541 -3.7135 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248610.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:34 Heat of formation + Delta-G solvation = -65.468640 kcal Electronic energy + Delta-G solvation = -13378.486672 eV Core-core repulsion = 11172.465248 eV Total energy + Delta-G solvation = -2206.021423 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.98876 -37.17388 -36.47151 -33.60700 -32.70538 -29.29303 -27.21069 -25.47593 -24.37098 -21.30754 -19.93314 -18.72576 -17.53105 -16.88408 -16.37178 -15.81607 -15.26789 -14.79050 -14.50899 -14.42885 -13.81874 -13.52372 -13.11560 -12.92836 -12.74783 -12.48705 -12.35334 -12.14192 -12.07470 -11.54461 -11.33903 -11.23487 -10.75221 -10.18767 -9.49894 -8.38252 -6.05629 1.37355 1.39061 1.49652 2.03036 2.29666 3.01251 3.10975 3.84403 3.86033 3.97131 4.19372 4.40470 4.46061 4.66457 4.72540 4.83698 4.86134 5.06319 5.11063 5.18566 5.22186 5.32276 5.35114 5.42560 5.47823 5.66005 6.23374 6.49902 7.16086 7.58081 8.05390 8.67643 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046703 B = 0.013280 C = 0.012190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.385300 B = 2107.857825 C = 2296.450767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.101 4.101 5 C -0.115 4.115 6 C -0.137 4.137 7 C 0.133 3.867 8 N -0.442 5.442 9 C -0.358 4.358 10 H 0.062 0.938 11 C 0.005 3.995 12 N -0.890 5.890 13 Si 0.984 3.016 14 H -0.267 1.267 15 H -0.266 1.266 16 H -0.279 1.279 17 C 0.443 3.557 18 O -0.669 6.669 19 H 0.059 0.941 20 H 0.099 0.901 21 H 0.034 0.966 22 H 0.044 0.956 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 -1.398 10.004 10.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.138 4.138 5 C -0.152 4.152 6 C -0.175 4.175 7 C 0.011 3.989 8 N -0.158 5.158 9 C -0.486 4.486 10 H 0.080 0.920 11 C -0.197 4.197 12 N -0.528 5.528 13 Si 0.808 3.192 14 H -0.192 1.192 15 H -0.190 1.190 16 H -0.205 1.205 17 C 0.233 3.767 18 O -0.561 6.561 19 H 0.078 0.922 20 H 0.117 0.883 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.122 0.878 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.777 -1.258 9.661 9.903 hybrid contribution 0.391 -0.230 -1.277 1.355 sum -1.385 -1.487 8.384 8.627 Atomic orbital electron populations 1.21632 0.92337 1.02629 1.02457 1.21138 0.97787 0.99654 0.92354 0.90260 1.21114 0.99524 0.97216 0.95979 1.21007 1.02310 0.93190 0.98668 1.21852 0.99056 1.01079 0.95553 1.21531 0.95210 0.92059 0.90120 1.43446 1.52057 1.09570 1.10754 1.19747 1.12054 1.26518 0.90238 0.92012 1.26040 0.94244 0.97712 1.01717 1.70036 1.07682 1.33276 1.41790 0.85151 0.78450 0.78077 0.77560 1.19217 1.19008 1.20469 1.21145 0.84400 0.81759 0.89410 1.90831 1.41506 1.63571 1.60188 0.92248 0.88270 0.94650 0.93728 0.87840 0.89573 0.90419 0.94093 0.88967 0.92024 0.91281 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.72 71.81 0.63 -3.80 16 2 C -0.09 -3.37 2.52 -12.02 -0.03 -3.40 16 3 H 0.08 3.02 8.16 -1.32 -0.01 3.01 16 4 C -0.10 -2.98 5.08 29.74 0.15 -2.83 16 5 C -0.11 -3.09 4.95 29.59 0.15 -2.94 16 6 C -0.14 -4.72 5.54 30.12 0.17 -4.55 16 7 C 0.13 5.95 4.42 86.27 0.38 6.33 16 8 N -0.44 -23.84 2.72 -635.49 -1.73 -25.57 16 9 C -0.36 -21.45 8.96 83.88 0.75 -20.70 16 10 H 0.06 4.03 7.24 -2.91 -0.02 4.01 16 11 C 0.01 0.28 4.79 84.93 0.41 0.69 16 12 N -0.89 -48.07 11.28 21.66 0.24 -47.82 16 13 Si 0.98 43.65 29.58 68.60 2.03 45.68 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 C 0.44 23.46 6.15 87.95 0.54 24.00 16 18 O -0.67 -42.16 16.32 -7.62 -0.12 -42.28 16 19 H 0.06 2.06 4.63 -2.39 -0.01 2.05 16 20 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 21 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 22 H 0.04 1.44 8.17 -2.05 -0.02 1.43 16 23 H 0.10 2.24 8.19 -2.07 -0.02 2.22 16 24 H 0.09 1.78 8.20 -1.97 -0.02 1.76 16 25 H 0.08 1.91 6.75 -2.59 -0.02 1.89 16 26 H 0.04 1.58 8.05 -2.38 -0.02 1.56 16 27 H 0.09 2.62 8.15 -2.35 -0.02 2.60 16 28 H 0.06 2.67 5.69 -2.60 -0.01 2.65 16 29 H 0.07 3.38 6.07 -2.07 -0.01 3.37 16 30 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -71.59 236.26 4.70 -66.89 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.14 Total: 10.29 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 3.14 Total: -7.20 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -1.48 Total: -73.39 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.12 Total: -42.28 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.59 4.70 -66.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248610.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.425 kcal (2) G-P(sol) polarization free energy of solvation -71.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds