Wall clock time and date at job start Mon Mar 30 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47564 * 2 1 4 4 C 1.50702 * 109.46829 * 240.00638 * 2 1 3 5 5 H 1.08013 * 119.99703 * 239.99970 * 4 2 1 6 6 C 1.37870 * 120.00441 * 59.99860 * 4 2 1 7 7 N 1.31514 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00142 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47110 * 269.99661 * 8 6 4 10 10 H 1.48496 * 109.46928 * 29.99982 * 8 6 4 11 11 H 1.48500 * 109.47054 * 150.00063 * 8 6 4 12 12 N 1.46902 * 109.47478 * 120.00759 * 2 1 3 13 13 C 1.47738 * 110.99490 * 284.96510 * 12 2 1 14 14 C 1.52199 * 87.53196 * 222.32372 * 13 12 2 15 15 C 1.52720 * 122.25671 * 150.44735 * 14 13 12 16 16 O 1.44458 * 85.01484 * 148.80904 * 15 14 13 17 17 C 1.44453 * 93.66539 * 336.81998 * 16 15 14 18 18 C 1.47736 * 111.00186 * 188.55636 * 12 2 1 19 19 H 1.08998 * 109.47356 * 174.02451 * 1 2 3 20 20 H 1.09003 * 109.46918 * 294.02637 * 1 2 3 21 21 H 1.08997 * 109.47362 * 54.02097 * 1 2 3 22 22 H 0.97000 * 120.00495 * 179.97438 * 7 6 4 23 23 H 1.09005 * 113.54554 * 336.98336 * 13 12 2 24 24 H 1.09002 * 113.54590 * 107.65792 * 13 12 2 25 25 H 1.09006 * 113.93943 * 262.82842 * 15 14 13 26 26 H 1.09002 * 113.94512 * 34.79100 * 15 14 13 27 27 H 1.09009 * 113.94239 * 269.16403 * 17 16 15 28 28 H 1.09001 * 113.94942 * 137.19822 * 17 16 15 29 29 H 1.09000 * 113.53921 * 252.33949 * 18 12 2 30 30 H 1.09001 * 113.54233 * 23.00364 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.6295 -0.5457 -4.4125 10 1 2.4857 -2.5660 -3.7121 11 1 1.3430 -0.9490 -5.1121 12 7 2.0198 -0.6926 1.1993 13 6 1.8604 0.1523 2.4007 14 6 3.2480 -0.3059 2.8264 15 6 4.1721 0.5693 3.6706 16 8 4.6653 -0.6811 4.1997 17 6 3.4604 -1.4045 3.8657 18 6 3.4821 -0.5372 1.3405 19 1 -0.3634 -1.0220 -0.1070 20 1 -0.3633 0.4184 0.9387 21 1 -0.3634 0.6037 -0.8316 22 1 0.7086 1.1615 -3.4843 23 1 1.8028 1.2180 2.1790 24 1 1.0670 -0.1846 3.0679 25 1 4.9081 1.1248 3.0892 26 1 3.6506 1.1849 4.4035 27 1 2.7142 -1.4120 4.6603 28 1 3.6407 -2.3903 3.4368 29 1 4.0396 -1.4485 1.1243 30 1 3.8794 0.3350 0.8213 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248897.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:15 Heat of formation + Delta-G solvation = 27.629446 kcal Electronic energy + Delta-G solvation = -12848.597175 eV Core-core repulsion = 10646.612788 eV Total energy + Delta-G solvation = -2201.984388 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.90891 -37.64153 -33.48180 -30.53610 -27.56393 -26.43455 -25.95997 -24.55014 -23.10434 -19.65504 -18.09612 -16.56427 -15.84422 -15.73087 -15.58924 -14.56744 -14.06263 -13.56987 -13.13488 -12.66034 -12.26917 -11.83445 -11.42824 -11.15815 -10.88594 -10.70486 -10.56246 -10.30757 -10.17598 -10.03778 -9.64226 -9.17479 -8.91145 -8.50757 -7.77764 -6.04983 -4.09745 3.28533 3.35202 3.39817 3.87186 4.34796 4.44669 4.65985 5.10869 5.26805 5.33637 5.43165 5.72822 5.89140 5.98549 6.04826 6.19276 6.24842 6.29893 6.37856 6.48758 6.63312 6.81267 7.00871 7.32070 7.40840 7.78180 8.00973 8.23118 8.44558 8.95965 9.55563 11.02261 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056468 B = 0.009402 C = 0.008654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.734365 B = 2977.387482 C = 3234.725438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.179 3.821 3 H 0.006 0.994 4 C -0.505 4.505 5 H 0.061 0.939 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.465 5.465 13 C 0.006 3.994 14 C -0.167 4.167 15 C 0.048 3.952 16 O -0.387 6.387 17 C 0.070 3.930 18 C 0.048 3.952 19 H 0.035 0.965 20 H 0.006 0.994 21 H 0.081 0.919 22 H 0.261 0.739 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 -0.241 9.169 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.072 3.928 3 H 0.024 0.976 4 C -0.544 4.544 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.188 5.188 13 C -0.124 4.124 14 C -0.168 4.168 15 C -0.029 4.029 16 O -0.306 6.306 17 C -0.007 4.007 18 C -0.081 4.081 19 H 0.054 0.946 20 H 0.025 0.975 21 H 0.100 0.900 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.841 -0.867 9.058 9.532 hybrid contribution 0.336 0.549 -1.115 1.287 sum 3.176 -0.318 7.943 8.560 Atomic orbital electron populations 1.21690 0.97412 1.00476 0.98816 1.19815 0.93107 0.92407 0.87483 0.97634 1.21050 1.31174 1.12395 0.89748 0.92120 1.24935 0.95099 0.95059 0.99076 1.69899 1.36810 1.23047 1.23488 0.86509 0.78456 0.80135 0.82414 1.20742 1.19819 1.21211 1.69004 1.05615 1.40921 1.03241 1.23526 0.95327 0.97498 0.96009 1.24407 0.97980 0.96866 0.97509 1.23748 0.95878 0.88460 0.94861 1.89665 1.34966 1.21502 1.84493 1.23520 0.86036 0.96708 0.94422 1.23117 0.93695 1.01566 0.89771 0.94604 0.97512 0.90024 0.92948 0.91721 0.90729 0.89278 0.90269 0.90190 0.88865 0.90464 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.06 37.16 0.34 -2.77 16 2 C 0.18 4.52 1.65 -68.86 -0.11 4.40 16 3 H 0.01 0.16 7.59 -51.93 -0.39 -0.23 16 4 C -0.51 -13.94 8.24 -34.44 -0.28 -14.22 16 5 H 0.06 1.69 7.75 -52.48 -0.41 1.28 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.46 11.39 55.43 0.63 -24.83 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.46 -10.04 6.11 -238.18 -1.46 -11.49 16 13 C 0.01 0.10 6.81 -6.64 -0.05 0.06 16 14 C -0.17 -2.66 1.49 -155.63 -0.23 -2.90 16 15 C 0.05 0.66 9.05 37.00 0.33 1.00 16 16 O -0.39 -6.10 12.45 -35.23 -0.44 -6.54 16 17 C 0.07 1.00 9.05 37.00 0.33 1.34 16 18 C 0.05 0.92 6.93 -6.65 -0.05 0.87 16 19 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 20 H 0.01 0.13 7.57 -51.93 -0.39 -0.26 16 21 H 0.08 2.18 6.25 -51.93 -0.32 1.85 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.06 1.15 7.69 -51.93 -0.40 0.76 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.07 1.43 7.80 -51.93 -0.40 1.02 16 LS Contribution 248.33 15.07 3.74 3.74 Total: -1.00 -29.13 248.33 -6.77 -35.89 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.42 Total: -2.51 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 0.19 Total: -10.66 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.82 Total: -36.32 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.44 Total: -6.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.13 -6.77 -35.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248897.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.522 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds