Wall clock time and date at job start Mon Mar 30 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47564 * 2 1 4 4 C 1.50702 * 109.46829 * 240.00638 * 2 1 3 5 5 H 1.08013 * 119.99703 * 239.99970 * 4 2 1 6 6 C 1.37870 * 120.00441 * 59.99860 * 4 2 1 7 7 N 1.31514 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00142 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47110 * 269.99661 * 8 6 4 10 10 H 1.48496 * 109.46928 * 29.99982 * 8 6 4 11 11 H 1.48500 * 109.47054 * 150.00063 * 8 6 4 12 12 N 1.46902 * 109.47478 * 120.00759 * 2 1 3 13 13 C 1.47738 * 110.99490 * 284.96510 * 12 2 1 14 14 C 1.52199 * 87.53196 * 222.32372 * 13 12 2 15 15 C 1.52720 * 122.25671 * 150.44735 * 14 13 12 16 16 O 1.44458 * 85.01484 * 148.80904 * 15 14 13 17 17 C 1.44453 * 93.66539 * 336.81998 * 16 15 14 18 18 C 1.47736 * 111.00186 * 188.55636 * 12 2 1 19 19 H 1.08998 * 109.47356 * 174.02451 * 1 2 3 20 20 H 1.09003 * 109.46918 * 294.02637 * 1 2 3 21 21 H 1.08997 * 109.47362 * 54.02097 * 1 2 3 22 22 H 0.97000 * 120.00495 * 179.97438 * 7 6 4 23 23 H 1.09005 * 113.54554 * 336.98336 * 13 12 2 24 24 H 1.09002 * 113.54590 * 107.65792 * 13 12 2 25 25 H 1.09006 * 113.93943 * 262.82842 * 15 14 13 26 26 H 1.09002 * 113.94512 * 34.79100 * 15 14 13 27 27 H 1.09009 * 113.94239 * 269.16403 * 17 16 15 28 28 H 1.09001 * 113.94942 * 137.19822 * 17 16 15 29 29 H 1.09000 * 113.53921 * 252.33949 * 18 12 2 30 30 H 1.09001 * 113.54233 * 23.00364 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.6295 -0.5457 -4.4125 10 1 2.4857 -2.5660 -3.7121 11 1 1.3430 -0.9490 -5.1121 12 7 2.0198 -0.6926 1.1993 13 6 1.8604 0.1523 2.4007 14 6 3.2480 -0.3059 2.8264 15 6 4.1721 0.5693 3.6706 16 8 4.6653 -0.6811 4.1997 17 6 3.4604 -1.4045 3.8657 18 6 3.4821 -0.5372 1.3405 19 1 -0.3634 -1.0220 -0.1070 20 1 -0.3633 0.4184 0.9387 21 1 -0.3634 0.6037 -0.8316 22 1 0.7086 1.1615 -3.4843 23 1 1.8028 1.2180 2.1790 24 1 1.0670 -0.1846 3.0679 25 1 4.9081 1.1248 3.0892 26 1 3.6506 1.1849 4.4035 27 1 2.7142 -1.4120 4.6603 28 1 3.6407 -2.3903 3.4368 29 1 4.0396 -1.4485 1.1243 30 1 3.8794 0.3350 0.8213 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248897.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:14 Heat of formation + Delta-G solvation = 6.119385 kcal Electronic energy + Delta-G solvation = -12849.529922 eV Core-core repulsion = 10646.612788 eV Total energy + Delta-G solvation = -2202.917134 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.23638 -39.10631 -35.46261 -32.43024 -29.05883 -27.77724 -27.53193 -26.34300 -24.68783 -21.50499 -19.36758 -18.52561 -17.35946 -16.99355 -16.90631 -16.36193 -15.64020 -15.20089 -14.83047 -14.33343 -13.67140 -13.35919 -13.17456 -12.99258 -12.77723 -12.43271 -12.21023 -12.18807 -11.84185 -11.68921 -10.99540 -10.89877 -10.59466 -10.50671 -9.51840 -8.16063 -6.28134 1.38927 1.40230 1.50963 2.39110 2.70916 3.07698 3.13002 3.34393 3.68177 4.11273 4.42166 4.45984 4.55235 4.65289 4.68296 4.75273 4.79352 4.91559 4.97138 4.98028 5.04374 5.16866 5.22013 5.40996 5.42027 5.66661 6.03324 6.23981 6.51974 6.84047 7.41066 8.90160 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056468 B = 0.009402 C = 0.008654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.734365 B = 2977.387482 C = 3234.725438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.184 3.816 3 H -0.023 1.023 4 C -0.523 4.523 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.271 1.271 11 H -0.281 1.281 12 N -0.482 5.482 13 C 0.008 3.992 14 C -0.157 4.157 15 C 0.056 3.944 16 O -0.405 6.405 17 C 0.075 3.925 18 C 0.041 3.959 19 H 0.026 0.974 20 H 0.030 0.970 21 H 0.057 0.943 22 H 0.263 0.737 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -0.569 10.244 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 H -0.005 1.005 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.206 1.206 12 N -0.204 5.204 13 C -0.121 4.121 14 C -0.158 4.158 15 C -0.021 4.021 16 O -0.324 6.324 17 C -0.001 4.001 18 C -0.088 4.088 19 H 0.046 0.954 20 H 0.049 0.951 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.137 -1.197 10.148 10.689 hybrid contribution 0.252 0.661 -1.412 1.580 sum 3.389 -0.536 8.735 9.385 Atomic orbital electron populations 1.21511 0.97154 0.99505 0.99093 1.19611 0.93264 0.90878 0.88649 1.00507 1.21308 1.31317 1.12310 0.91220 0.93111 1.25701 0.95258 0.95753 1.01891 1.70012 1.37524 1.24073 1.24177 0.85539 0.78116 0.78996 0.78897 1.20057 1.19567 1.20622 1.68919 1.07044 1.41456 1.03029 1.23569 0.97232 0.96880 0.94376 1.24337 0.96817 0.98785 0.95845 1.23912 0.95303 0.88125 0.94750 1.89661 1.35783 1.22377 1.84621 1.23685 0.86110 0.96020 0.94317 1.23096 0.92305 1.00712 0.92727 0.95433 0.95059 0.92410 0.92814 0.92027 0.88851 0.88722 0.87390 0.87405 0.88903 0.91003 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.66 9.06 71.98 0.65 -5.01 16 2 C 0.18 9.40 1.65 44.17 0.07 9.47 16 3 H -0.02 -1.26 7.59 -2.39 -0.02 -1.28 16 4 C -0.52 -29.29 8.24 25.60 0.21 -29.08 16 5 H 0.05 2.87 7.75 -2.90 -0.02 2.85 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -52.96 11.39 21.44 0.24 -52.72 16 8 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.48 -20.62 6.11 -907.70 -5.55 -26.17 16 13 C 0.01 0.29 6.81 84.02 0.57 0.86 16 14 C -0.16 -4.70 1.49 -52.90 -0.08 -4.78 16 15 C 0.06 1.39 9.05 71.88 0.65 2.04 16 16 O -0.40 -11.64 12.45 -148.98 -1.86 -13.49 16 17 C 0.07 1.94 9.05 71.88 0.65 2.59 16 18 C 0.04 1.57 6.93 84.02 0.58 2.15 16 19 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 21 H 0.06 3.12 6.25 -2.39 -0.01 3.11 16 22 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 23 H 0.06 2.12 7.69 -2.38 -0.02 2.10 16 24 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.06 2.30 7.80 -2.39 -0.02 2.28 16 Total: -1.00 -61.85 248.33 -0.27 -62.11 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.10 Total: 4.76 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 3.76 Total: -20.60 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -5.30 Total: -78.88 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.86 Total: -13.49 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -61.85 -0.27 -62.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248897.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.234 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds