Wall clock time and date at job start Mon Mar 30 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46842 * 2 1 4 4 C 1.50694 * 109.47120 * 119.99480 * 2 1 3 5 5 H 1.08004 * 120.00341 * 120.00251 * 4 2 1 6 6 C 1.37880 * 120.00348 * 300.00021 * 4 2 1 7 7 N 1.31516 * 120.00515 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99528 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47170 * 89.99917 * 8 6 4 10 10 H 1.48499 * 109.47058 * 209.99620 * 8 6 4 11 11 H 1.48498 * 109.47358 * 329.99546 * 8 6 4 12 12 N 1.46897 * 109.47384 * 239.99827 * 2 1 3 13 13 C 1.48258 * 111.00150 * 59.99507 * 12 2 1 14 14 C 1.52513 * 85.64339 * 136.62137 * 13 12 2 15 15 C 1.51944 * 122.69023 * 105.33275 * 14 13 12 16 16 O 1.43635 * 88.06504 * 99.03095 * 15 14 13 17 17 C 1.43631 * 88.78033 * 26.77630 * 16 15 14 18 18 C 1.48252 * 111.00332 * 159.77889 * 12 2 1 19 19 H 1.09010 * 109.47211 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47263 * 300.00535 * 1 2 3 21 21 H 1.08997 * 109.47196 * 60.00472 * 1 2 3 22 22 H 0.96994 * 120.00193 * 180.02562 * 7 6 4 23 23 H 1.08999 * 113.84425 * 22.44238 * 13 12 2 24 24 H 1.08995 * 113.95736 * 250.81049 * 13 12 2 25 25 H 1.09006 * 113.45410 * 344.23289 * 15 14 13 26 26 H 1.08997 * 113.46018 * 213.82906 * 15 14 13 27 27 H 1.08997 * 113.45607 * 88.02584 * 17 16 15 28 28 H 1.09000 * 113.45470 * 218.43256 * 17 16 15 29 29 H 1.09000 * 113.84964 * 109.19869 * 18 12 2 30 30 H 1.09004 * 113.84259 * 337.55774 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8587 3.5567 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8728 2.6997 10 1 0.9757 1.9954 3.9066 11 1 0.8469 2.1766 1.4919 12 7 2.0197 -0.6925 -1.1994 13 6 1.5443 -0.0204 -2.4324 14 6 2.9649 -0.2203 -2.9498 15 6 3.3195 -1.2702 -3.9893 16 8 3.2800 -0.2317 -4.9808 17 6 3.6116 0.7177 -3.9553 18 6 3.4212 -0.3122 -1.4975 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 1.9034 -0.5275 4.4376 23 1 1.2712 1.0248 -2.2871 24 1 0.7915 -0.5852 -2.9822 25 1 2.5464 -2.0271 -4.1228 26 1 4.3114 -1.7003 -3.8509 27 1 4.6846 0.8394 -3.8073 28 1 3.0894 1.6688 -4.0594 29 1 4.1428 -1.1078 -1.3118 30 1 3.7192 0.6442 -1.0678 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248898.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:17 Heat of formation + Delta-G solvation = 37.412861 kcal Electronic energy + Delta-G solvation = -12896.689985 eV Core-core repulsion = 10695.129839 eV Total energy + Delta-G solvation = -2201.560147 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.22704 -37.89535 -33.49253 -31.19192 -28.09484 -26.33630 -26.23568 -24.53638 -23.36710 -19.64820 -18.26265 -16.80036 -16.08658 -15.88720 -15.73491 -14.85561 -14.32561 -13.75236 -13.00002 -12.86722 -12.49326 -12.30704 -11.99312 -11.84213 -10.97497 -10.76477 -10.57629 -10.35939 -10.12942 -10.06314 -9.64760 -9.30119 -9.18717 -8.59307 -7.89553 -6.09732 -4.08337 3.23089 3.31712 3.34936 4.00066 4.18031 4.36082 4.56910 4.80597 5.19405 5.26957 5.35467 5.63269 5.67690 5.83584 5.89928 6.03328 6.06320 6.09039 6.16330 6.27551 6.30200 6.37526 6.53355 6.69446 6.91455 7.35920 7.73205 7.84535 8.59057 8.98693 9.51989 11.03504 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066047 B = 0.009629 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.839250 B = 2907.284051 C = 3054.311564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.149 3.851 3 H 0.005 0.995 4 C -0.501 4.501 5 H 0.080 0.920 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.458 5.458 13 C 0.030 3.970 14 C -0.166 4.166 15 C 0.061 3.939 16 O -0.376 6.376 17 C 0.040 3.960 18 C 0.033 3.967 19 H 0.060 0.940 20 H 0.042 0.958 21 H 0.028 0.972 22 H 0.264 0.736 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 3.432 -11.737 12.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.041 3.959 3 H 0.022 0.978 4 C -0.540 4.540 5 H 0.098 0.902 6 C -0.133 4.133 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.181 5.181 13 C -0.099 4.099 14 C -0.167 4.167 15 C -0.015 4.015 16 O -0.295 6.295 17 C -0.037 4.037 18 C -0.096 4.096 19 H 0.079 0.921 20 H 0.061 0.939 21 H 0.047 0.953 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.820 2.756 -11.671 12.020 hybrid contribution -0.477 1.706 0.471 1.833 sum 0.343 4.463 -11.200 12.061 Atomic orbital electron populations 1.22171 0.98455 1.01433 0.98402 1.20248 0.91892 0.93046 0.90698 0.97752 1.20858 1.31827 1.13552 0.87715 0.90164 1.24944 0.95863 0.96638 0.95824 1.69879 1.45685 1.40288 0.97872 0.86874 0.80812 0.83760 0.76813 1.20534 1.22402 1.19560 1.68605 1.02583 1.46163 1.00769 1.23436 0.93882 0.98759 0.93846 1.24094 0.99355 0.97461 0.95774 1.23242 1.01641 0.92113 0.84547 1.89847 1.90778 1.20087 1.28809 1.23496 0.99993 0.94565 0.85687 1.23442 0.94321 1.00850 0.90947 0.92055 0.93908 0.95291 0.92600 0.91492 0.89754 0.89262 0.89994 0.90133 0.89875 0.89570 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.57 37.15 0.32 -2.92 16 2 C 0.15 3.52 1.30 -68.87 -0.09 3.43 16 3 H 0.00 0.12 6.70 -51.93 -0.35 -0.23 16 4 C -0.50 -14.08 9.18 -34.44 -0.32 -14.39 16 5 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 8 Si 0.89 21.86 24.37 -169.99 -4.14 17.71 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.46 -9.38 5.97 -240.21 -1.43 -10.82 16 13 C 0.03 0.50 6.60 -3.32 -0.02 0.47 16 14 C -0.17 -2.48 1.53 -156.26 -0.24 -2.72 16 15 C 0.06 0.83 8.60 26.14 0.22 1.06 16 16 O -0.38 -5.60 12.74 -35.23 -0.45 -6.05 16 17 C 0.04 0.52 8.60 26.15 0.22 0.74 16 18 C 0.03 0.59 7.61 -3.33 -0.03 0.57 16 19 H 0.06 1.36 8.14 -51.92 -0.42 0.93 16 20 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 21 H 0.03 0.54 7.00 -51.93 -0.36 0.18 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.07 1.09 7.63 -51.93 -0.40 0.70 16 24 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.07 1.28 7.63 -51.93 -0.40 0.88 16 LS Contribution 240.57 15.07 3.63 3.63 Total: -1.00 -30.49 240.57 -5.88 -36.37 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.24 Total: -2.33 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.02 Total: -11.87 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.66 Total: -37.46 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.45 Total: -6.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.49 -5.88 -36.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248898.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.785 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds