Wall clock time and date at job start Mon Mar 30 2020 02:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.43263 * 2 1 4 4 C 1.54628 * 110.48893 * 237.45895 * 2 1 3 5 5 C 1.54481 * 101.76384 * 265.98471 * 4 2 1 6 6 C 1.52998 * 110.24382 * 93.58614 * 5 4 2 7 7 C 1.52995 * 110.24804 * 215.49817 * 5 4 2 8 8 N 1.46770 * 105.47496 * 334.58546 * 5 4 2 9 9 C 1.37091 * 124.34876 * 196.99724 * 8 5 4 10 10 H 1.08002 * 120.00106 * 326.16410 * 9 8 5 11 11 C 1.38951 * 120.00244 * 146.17140 * 9 8 5 12 12 N 1.31415 * 119.99721 * 339.87068 * 11 9 8 13 13 Si 1.86798 * 120.00251 * 159.87324 * 11 9 8 14 14 H 1.48498 * 109.46919 * 60.00121 * 13 11 9 15 15 H 1.48504 * 109.47004 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47459 * 299.99770 * 13 11 9 17 17 C 1.34420 * 111.29810 * 17.01514 * 8 5 4 18 18 O 1.21294 * 124.94094 * 179.62878 * 17 8 5 19 19 H 1.09001 * 109.46840 * 182.54244 * 1 2 3 20 20 H 1.08999 * 109.47439 * 302.54059 * 1 2 3 21 21 H 1.09000 * 109.47160 * 62.54687 * 1 2 3 22 22 H 1.09002 * 110.96727 * 147.86589 * 4 2 1 23 23 H 1.08995 * 110.96779 * 24.10420 * 4 2 1 24 24 H 1.08996 * 109.47401 * 60.00087 * 6 5 4 25 25 H 1.09001 * 109.46937 * 299.99642 * 6 5 4 26 26 H 1.09001 * 109.47034 * 180.02562 * 6 5 4 27 27 H 1.09005 * 109.47155 * 298.77399 * 7 5 4 28 28 H 1.09004 * 109.46943 * 58.76759 * 7 5 4 29 29 H 1.08992 * 109.47408 * 178.77317 * 7 5 4 30 30 H 0.96994 * 119.99870 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0712 -0.7791 -1.2211 5 6 2.2807 -2.1897 -0.6270 6 6 1.0433 -3.0559 -0.8708 7 6 3.5161 -2.8467 -1.2457 8 7 2.4803 -1.9828 0.8122 9 6 3.0230 -2.9138 1.6596 10 1 2.8440 -3.9657 1.4923 11 6 3.8034 -2.5043 2.7339 12 7 4.3503 -1.3093 2.7309 13 14 4.0752 -3.6522 4.1822 14 1 4.7373 -4.8952 3.7111 15 1 4.9381 -2.9833 5.1888 16 1 2.7670 -3.9909 4.7978 17 6 2.0622 -0.7633 1.1928 18 8 2.1060 -0.3366 2.3274 19 1 -0.3633 -1.0267 0.0456 20 1 -0.3634 0.5528 0.8663 21 1 -0.3633 0.4738 -0.9119 22 1 3.0151 -0.3570 -1.5660 23 1 1.3375 -0.8002 -2.0268 24 1 0.8664 -3.1433 -1.9428 25 1 0.1774 -2.5943 -0.3961 26 1 1.2043 -4.0470 -0.4467 27 1 3.3724 -2.9504 -2.3212 28 1 4.3918 -2.2263 -1.0544 29 1 3.6645 -3.8312 -0.8024 30 1 4.8953 -1.0236 3.4806 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685967830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:54 Heat of formation + Delta-G solvation = -33.773182 kcal Electronic energy + Delta-G solvation = -13482.430556 eV Core-core repulsion = 11277.783551 eV Total energy + Delta-G solvation = -2204.647005 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.53342 -35.32249 -33.41459 -31.55624 -30.09711 -26.97478 -26.37991 -24.50068 -22.11720 -19.40832 -19.01550 -16.13256 -15.17886 -14.67438 -14.33183 -13.74062 -13.29030 -12.97139 -12.44671 -12.23886 -12.15729 -11.74156 -11.53488 -11.32978 -11.00407 -10.94897 -10.72798 -10.54950 -10.45291 -10.10329 -10.03848 -9.60949 -8.74937 -7.87918 -7.11392 -6.03302 -3.70184 3.33411 3.40702 3.42645 4.30096 4.47011 5.12366 5.22719 5.29832 5.43012 5.49598 5.71502 5.89916 6.10054 6.13790 6.17327 6.26162 6.30443 6.37027 6.48448 6.50604 6.59889 6.73707 6.88868 6.97145 7.10770 7.64127 8.24671 9.07061 9.32059 9.69712 10.50549 11.04682 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.015615 C = 0.013261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.194579 B = 1792.755474 C = 2110.986689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 H 0.080 0.920 4 C -0.118 4.118 5 C 0.142 3.858 6 C -0.149 4.149 7 C -0.133 4.133 8 N -0.443 5.443 9 C -0.335 4.335 10 H 0.080 0.920 11 C 0.054 3.946 12 N -0.822 5.822 13 Si 0.911 3.089 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.476 3.524 18 O -0.535 6.535 19 H 0.058 0.942 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 -1.285 -8.460 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 H 0.099 0.901 4 C -0.156 4.156 5 C 0.055 3.945 6 C -0.208 4.208 7 C -0.191 4.191 8 N -0.165 5.165 9 C -0.462 4.462 10 H 0.098 0.902 11 C -0.156 4.156 12 N -0.456 5.456 13 Si 0.739 3.261 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.263 3.737 18 O -0.413 6.413 19 H 0.077 0.923 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.061 -0.992 -7.718 8.777 hybrid contribution 0.301 -0.491 0.653 0.871 sum -3.760 -1.483 -7.065 8.140 Atomic orbital electron populations 1.21666 0.94117 1.01977 1.01012 1.21872 0.96516 1.00190 0.96510 0.90128 1.22693 1.00896 0.95284 0.96763 1.20906 0.94602 0.93883 0.85084 1.22195 0.98100 1.00466 0.99999 1.21855 0.97666 1.01633 0.97988 1.43647 1.54450 1.14498 1.03879 1.18838 1.30869 0.88501 1.07981 0.90228 1.25178 0.94671 0.96234 0.99513 1.69921 1.26765 1.18811 1.30118 0.86291 0.78089 0.79856 0.81909 1.20370 1.21218 1.20145 1.19882 0.81629 0.83711 0.88522 1.90513 1.57132 1.71651 1.21998 0.92291 0.92594 0.92995 0.91137 0.91082 0.93062 0.92470 0.92538 0.93626 0.92421 0.92143 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.11 37.16 0.34 -1.88 16 2 C -0.13 -2.63 3.52 -90.63 -0.32 -2.95 16 3 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 4 C -0.12 -2.09 5.75 -25.10 -0.14 -2.24 16 5 C 0.14 2.83 0.96 -130.90 -0.13 2.70 16 6 C -0.15 -2.56 8.70 37.16 0.32 -2.23 16 7 C -0.13 -2.48 8.22 37.16 0.31 -2.17 16 8 N -0.44 -11.41 2.51 -99.85 -0.25 -11.66 16 9 C -0.34 -9.36 8.83 -14.94 -0.13 -9.49 16 10 H 0.08 2.12 7.91 -52.49 -0.42 1.70 16 11 C 0.05 1.57 4.74 -17.47 -0.08 1.49 16 12 N -0.82 -25.33 11.26 55.50 0.62 -24.71 16 13 Si 0.91 22.27 29.60 -169.99 -5.03 17.23 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.48 12.81 6.65 -10.86 -0.07 12.74 16 18 O -0.53 -16.85 15.25 5.55 0.08 -16.77 16 19 H 0.06 1.01 5.58 -51.93 -0.29 0.72 16 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 23 H 0.07 1.02 7.65 -51.93 -0.40 0.63 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.99 5.58 -51.93 -0.29 0.70 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.16 7.79 -51.93 -0.40 0.76 16 30 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 244.15 15.07 3.68 3.68 Total: -1.00 -33.48 244.15 -5.10 -38.59 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.30 Total: -2.33 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 0.09 Total: -4.04 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.37 Total: -36.37 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.08 Total: -16.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.48 -5.10 -38.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.815 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds