Wall clock time and date at job start Mon Mar 30 2020 02:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.43263 * 2 1 4 4 C 1.54628 * 110.48893 * 237.45895 * 2 1 3 5 5 C 1.54481 * 101.76384 * 265.98471 * 4 2 1 6 6 C 1.52998 * 110.24382 * 93.58614 * 5 4 2 7 7 C 1.52995 * 110.24804 * 215.49817 * 5 4 2 8 8 N 1.46770 * 105.47496 * 334.58546 * 5 4 2 9 9 C 1.37091 * 124.34876 * 196.99724 * 8 5 4 10 10 H 1.08002 * 120.00106 * 326.16410 * 9 8 5 11 11 C 1.38951 * 120.00244 * 146.17140 * 9 8 5 12 12 N 1.31415 * 119.99721 * 339.87068 * 11 9 8 13 13 Si 1.86798 * 120.00251 * 159.87324 * 11 9 8 14 14 H 1.48498 * 109.46919 * 60.00121 * 13 11 9 15 15 H 1.48504 * 109.47004 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47459 * 299.99770 * 13 11 9 17 17 C 1.34420 * 111.29810 * 17.01514 * 8 5 4 18 18 O 1.21294 * 124.94094 * 179.62878 * 17 8 5 19 19 H 1.09001 * 109.46840 * 182.54244 * 1 2 3 20 20 H 1.08999 * 109.47439 * 302.54059 * 1 2 3 21 21 H 1.09000 * 109.47160 * 62.54687 * 1 2 3 22 22 H 1.09002 * 110.96727 * 147.86589 * 4 2 1 23 23 H 1.08995 * 110.96779 * 24.10420 * 4 2 1 24 24 H 1.08996 * 109.47401 * 60.00087 * 6 5 4 25 25 H 1.09001 * 109.46937 * 299.99642 * 6 5 4 26 26 H 1.09001 * 109.47034 * 180.02562 * 6 5 4 27 27 H 1.09005 * 109.47155 * 298.77399 * 7 5 4 28 28 H 1.09004 * 109.46943 * 58.76759 * 7 5 4 29 29 H 1.08992 * 109.47408 * 178.77317 * 7 5 4 30 30 H 0.96994 * 119.99870 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0712 -0.7791 -1.2211 5 6 2.2807 -2.1897 -0.6270 6 6 1.0433 -3.0559 -0.8708 7 6 3.5161 -2.8467 -1.2457 8 7 2.4803 -1.9828 0.8122 9 6 3.0230 -2.9138 1.6596 10 1 2.8440 -3.9657 1.4923 11 6 3.8034 -2.5043 2.7339 12 7 4.3503 -1.3093 2.7309 13 14 4.0752 -3.6522 4.1822 14 1 4.7373 -4.8952 3.7111 15 1 4.9381 -2.9833 5.1888 16 1 2.7670 -3.9909 4.7978 17 6 2.0622 -0.7633 1.1928 18 8 2.1060 -0.3366 2.3274 19 1 -0.3633 -1.0267 0.0456 20 1 -0.3634 0.5528 0.8663 21 1 -0.3633 0.4738 -0.9119 22 1 3.0151 -0.3570 -1.5660 23 1 1.3375 -0.8002 -2.0268 24 1 0.8664 -3.1433 -1.9428 25 1 0.1774 -2.5943 -0.3961 26 1 1.2043 -4.0470 -0.4467 27 1 3.3724 -2.9504 -2.3212 28 1 4.3918 -2.2263 -1.0544 29 1 3.6645 -3.8312 -0.8024 30 1 4.8953 -1.0236 3.4806 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685967830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:54 Heat of formation + Delta-G solvation = -56.477939 kcal Electronic energy + Delta-G solvation = -13483.415109 eV Core-core repulsion = 11277.783551 eV Total energy + Delta-G solvation = -2205.631557 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.29529 -37.29312 -35.33666 -33.31779 -32.00210 -28.40170 -27.91609 -26.42740 -23.80254 -21.18395 -20.82039 -18.12492 -17.08748 -16.29521 -16.18345 -15.65251 -14.96618 -14.69110 -14.11407 -13.80278 -13.65003 -13.41423 -13.15301 -12.82763 -12.78001 -12.67667 -12.48428 -12.40900 -12.14523 -11.87928 -11.58056 -11.09940 -10.82519 -9.92237 -9.19206 -8.20240 -5.89500 1.35380 1.43494 1.48255 2.29014 2.48925 3.22895 3.34827 3.74020 3.79602 4.06303 4.28280 4.44011 4.56839 4.71483 4.87414 4.90738 4.92585 4.97673 5.06126 5.11001 5.12318 5.29693 5.41246 5.49773 5.51810 5.66852 6.13172 6.95983 7.29855 7.64782 8.46374 8.88235 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.015615 C = 0.013261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.194579 B = 1792.755474 C = 2110.986689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.078 0.922 4 C -0.106 4.106 5 C 0.126 3.874 6 C -0.143 4.143 7 C -0.127 4.127 8 N -0.458 5.458 9 C -0.345 4.345 10 H 0.087 0.913 11 C -0.004 4.004 12 N -0.866 5.866 13 Si 0.975 3.025 14 H -0.253 1.253 15 H -0.290 1.290 16 H -0.279 1.279 17 C 0.447 3.553 18 O -0.600 6.600 19 H 0.059 0.941 20 H 0.040 0.960 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 -2.237 -10.929 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 H 0.097 0.903 4 C -0.143 4.143 5 C 0.041 3.959 6 C -0.200 4.200 7 C -0.185 4.185 8 N -0.178 5.178 9 C -0.473 4.473 10 H 0.105 0.895 11 C -0.209 4.209 12 N -0.502 5.502 13 Si 0.799 3.201 14 H -0.177 1.177 15 H -0.216 1.216 16 H -0.204 1.204 17 C 0.236 3.764 18 O -0.484 6.484 19 H 0.077 0.923 20 H 0.059 0.941 21 H 0.116 0.884 22 H 0.090 0.910 23 H 0.139 0.861 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.251 -1.989 -10.247 11.685 hybrid contribution 0.635 -0.220 1.351 1.509 sum -4.616 -2.209 -8.897 10.264 Atomic orbital electron populations 1.21661 0.91293 1.02352 1.02727 1.21850 0.98741 0.99344 0.94601 0.90338 1.22754 1.02296 0.92689 0.96573 1.21385 0.96521 0.96240 0.81744 1.22142 0.96153 0.98860 1.02884 1.21816 0.95962 0.99964 1.00757 1.44025 1.53258 1.13972 1.06577 1.19211 1.29869 0.89409 1.08761 0.89515 1.26139 0.94797 0.97697 1.02312 1.70066 1.28403 1.21163 1.30556 0.85300 0.77742 0.78671 0.78371 1.17747 1.21613 1.20440 1.21104 0.81086 0.84660 0.89565 1.90448 1.59631 1.73202 1.25073 0.92259 0.94099 0.88368 0.91020 0.86092 0.88541 0.92763 0.93780 0.88939 0.95151 0.93537 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 9.11 71.98 0.66 -3.18 16 2 C -0.12 -4.84 3.52 -10.80 -0.04 -4.88 16 3 H 0.08 3.08 8.14 -2.38 -0.02 3.07 16 4 C -0.11 -3.34 5.75 31.65 0.18 -3.15 16 5 C 0.13 4.71 0.96 4.05 0.00 4.72 16 6 C -0.14 -4.33 8.70 71.98 0.63 -3.71 16 7 C -0.13 -4.43 8.22 71.98 0.59 -3.84 16 8 N -0.46 -23.64 2.51 -588.40 -1.48 -25.12 16 9 C -0.34 -19.53 8.83 84.04 0.74 -18.79 16 10 H 0.09 4.63 7.91 -2.91 -0.02 4.61 16 11 C 0.00 -0.24 4.74 84.93 0.40 0.16 16 12 N -0.87 -55.60 11.26 21.66 0.24 -55.36 16 13 Si 0.97 46.77 29.60 68.60 2.03 48.80 16 14 H -0.25 -11.01 7.11 99.48 0.71 -10.31 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 17 C 0.45 24.48 6.65 87.90 0.58 25.06 16 18 O -0.60 -39.53 15.25 -3.07 -0.05 -39.57 16 19 H 0.06 1.85 5.58 -2.39 -0.01 1.83 16 20 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.07 2.25 7.91 -2.39 -0.02 2.23 16 23 H 0.12 2.67 7.65 -2.39 -0.02 2.65 16 24 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 1.68 5.58 -2.39 -0.01 1.67 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.72 7.79 -2.39 -0.02 1.70 16 30 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -77.21 244.15 5.61 -71.61 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.11 Total: 7.25 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 3.75 Total: -7.61 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.24 Total: -80.47 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.05 Total: -39.57 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -77.21 5.61 -71.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.129 kcal (2) G-P(sol) polarization free energy of solvation -77.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds