Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.43380 * 2 1 4 4 C 1.54625 * 110.59911 * 122.62029 * 2 1 3 5 5 C 1.54658 * 101.68691 * 93.72311 * 4 2 1 6 6 C 1.53004 * 110.40070 * 266.74191 * 5 4 2 7 7 C 1.53003 * 110.18511 * 144.67805 * 5 4 2 8 8 N 1.46769 * 105.37947 * 25.76542 * 5 4 2 9 9 C 1.37101 * 124.34416 * 162.85915 * 8 5 4 10 10 H 1.07993 * 120.00725 * 33.80716 * 9 8 5 11 11 C 1.38954 * 119.99270 * 214.08372 * 9 8 5 12 12 N 1.31409 * 120.00447 * 19.68456 * 11 9 8 13 13 Si 1.86800 * 119.99822 * 199.68397 * 11 9 8 14 14 H 1.48494 * 109.47193 * 59.99785 * 13 11 9 15 15 H 1.48501 * 109.47153 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47001 * 300.00090 * 13 11 9 17 17 C 1.34411 * 111.29991 * 342.59050 * 8 5 4 18 18 O 1.21294 * 124.93969 * 180.69537 * 17 8 5 19 19 H 1.09000 * 109.47103 * 177.00640 * 1 2 3 20 20 H 1.08998 * 109.47151 * 297.00601 * 1 2 3 21 21 H 1.08995 * 109.47086 * 57.01056 * 1 2 3 22 22 H 1.09001 * 110.96863 * 212.05600 * 4 2 1 23 23 H 1.09000 * 110.97465 * 335.78027 * 4 2 1 24 24 H 1.08998 * 109.47313 * 182.19681 * 6 5 4 25 25 H 1.09005 * 109.46441 * 302.19586 * 6 5 4 26 26 H 1.09004 * 109.46979 * 62.19371 * 6 5 4 27 27 H 1.08995 * 109.46916 * 302.64929 * 7 5 4 28 28 H 1.09005 * 109.46255 * 62.64830 * 7 5 4 29 29 H 1.08996 * 109.47197 * 182.64548 * 7 5 4 30 30 H 0.96998 * 120.00511 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0740 -0.7802 1.2191 5 6 2.2763 -2.1926 0.6222 6 6 1.0358 -3.0555 0.8618 7 6 3.5102 -2.8546 1.2389 8 7 2.4784 -1.9820 -0.8161 9 6 3.0195 -2.9123 -1.6655 10 1 2.8375 -3.9641 -1.5013 11 6 3.8069 -2.5021 -2.7344 12 7 4.3534 -1.3070 -2.7275 13 14 4.0886 -3.6494 -4.1814 14 1 2.7845 -3.9883 -4.8056 15 1 4.9579 -2.9800 -5.1821 16 1 4.7478 -4.8925 -3.7064 17 6 2.0595 -0.7623 -1.1946 18 8 2.0998 -0.3350 -2.3291 19 1 -0.3633 -1.0263 -0.0537 20 1 -0.3633 0.4666 0.9156 21 1 -0.3633 0.5595 -0.8619 22 1 3.0188 -0.3585 1.5622 23 1 1.3425 -0.8015 2.0268 24 1 1.2092 -4.0579 0.4703 25 1 0.8344 -3.1131 1.9315 26 1 0.1799 -2.6103 0.3543 27 1 4.3835 -2.2251 1.0687 28 1 3.3569 -2.9814 2.3106 29 1 3.6689 -3.8289 0.7768 30 1 4.9033 -1.0208 -3.4735 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685967831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = -33.957652 kcal Electronic energy + Delta-G solvation = -13482.081681 eV Core-core repulsion = 11277.426676 eV Total energy + Delta-G solvation = -2204.655005 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.52845 -35.31721 -33.41318 -31.55514 -30.09128 -26.97748 -26.38143 -24.50103 -22.11444 -19.40480 -19.01516 -16.13136 -15.17840 -14.67707 -14.33116 -13.73974 -13.28893 -12.96486 -12.45204 -12.23835 -12.16798 -11.73646 -11.52826 -11.33040 -11.00188 -10.94638 -10.72846 -10.54955 -10.45350 -10.10530 -10.04215 -9.60881 -8.74932 -7.87731 -7.11558 -6.03351 -3.70500 3.33297 3.40587 3.42521 4.30069 4.47038 5.12331 5.22733 5.29272 5.43280 5.49503 5.71889 5.89646 6.09890 6.13863 6.17382 6.26068 6.31058 6.36906 6.48486 6.50632 6.59916 6.73390 6.88807 6.97344 7.10720 7.64056 8.24747 9.07203 9.32052 9.69585 10.50509 11.04740 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040524 B = 0.015610 C = 0.013258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.790356 B = 1793.255497 C = 2111.448954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 H 0.080 0.920 4 C -0.118 4.118 5 C 0.141 3.859 6 C -0.149 4.149 7 C -0.134 4.134 8 N -0.443 5.443 9 C -0.335 4.335 10 H 0.080 0.920 11 C 0.054 3.946 12 N -0.823 5.823 13 Si 0.912 3.088 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.477 3.523 18 O -0.535 6.535 19 H 0.058 0.942 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.249 -1.307 8.456 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 H 0.099 0.901 4 C -0.156 4.156 5 C 0.055 3.945 6 C -0.207 4.207 7 C -0.191 4.191 8 N -0.165 5.165 9 C -0.462 4.462 10 H 0.098 0.902 11 C -0.156 4.156 12 N -0.457 5.457 13 Si 0.739 3.261 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.204 1.204 17 C 0.263 3.737 18 O -0.413 6.413 19 H 0.077 0.923 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.057 -1.013 7.715 8.775 hybrid contribution 0.309 -0.490 -0.651 0.871 sum -3.748 -1.503 7.064 8.136 Atomic orbital electron populations 1.21663 0.94112 1.01993 1.00999 1.21873 0.96514 1.00192 0.96527 0.90132 1.22721 1.00900 0.95249 0.96738 1.20948 0.94591 0.93862 0.85095 1.22190 0.98067 1.00439 1.00011 1.21857 0.97626 1.01635 0.98030 1.43646 1.54477 1.14460 1.03917 1.18842 1.30602 0.88560 1.08172 0.90232 1.25184 0.94641 0.96234 0.99519 1.69913 1.26710 1.18792 1.30287 0.86289 0.78092 0.79848 0.81901 1.20135 1.21214 1.20366 1.19885 0.81537 0.83736 0.88523 1.90512 1.57137 1.71654 1.22043 0.92295 0.92999 0.92593 0.91104 0.91116 0.92561 0.93066 0.92444 0.92461 0.93634 0.92089 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.11 37.16 0.34 -1.88 16 2 C -0.13 -2.63 3.52 -90.63 -0.32 -2.95 16 3 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 4 C -0.12 -2.09 5.76 -25.00 -0.14 -2.23 16 5 C 0.14 2.82 0.96 -130.80 -0.13 2.70 16 6 C -0.15 -2.55 8.69 37.16 0.32 -2.22 16 7 C -0.13 -2.48 8.25 37.16 0.31 -2.18 16 8 N -0.44 -11.42 2.51 -99.75 -0.25 -11.67 16 9 C -0.34 -9.35 8.79 -14.93 -0.13 -9.48 16 10 H 0.08 2.12 7.91 -52.49 -0.42 1.70 16 11 C 0.05 1.57 4.75 -17.47 -0.08 1.49 16 12 N -0.82 -25.35 11.28 55.50 0.63 -24.73 16 13 Si 0.91 22.26 29.60 -169.99 -5.03 17.23 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.48 12.83 6.64 -10.86 -0.07 12.76 16 18 O -0.54 -16.87 15.29 5.55 0.08 -16.78 16 19 H 0.06 1.01 5.60 -51.93 -0.29 0.72 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 23 H 0.07 1.02 7.66 -51.93 -0.40 0.62 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.00 5.62 -51.93 -0.29 0.71 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.18 7.74 -51.93 -0.40 0.78 16 30 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 244.20 15.07 3.68 3.68 Total: -1.00 -33.49 244.20 -5.10 -38.59 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.30 Total: -2.31 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 0.09 Total: -4.01 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.38 Total: -36.40 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.08 Total: -16.78 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.49 -5.10 -38.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.633 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds