Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.43380 * 2 1 4 4 C 1.54625 * 110.59911 * 122.62029 * 2 1 3 5 5 C 1.54658 * 101.68691 * 93.72311 * 4 2 1 6 6 C 1.53004 * 110.40070 * 266.74191 * 5 4 2 7 7 C 1.53003 * 110.18511 * 144.67805 * 5 4 2 8 8 N 1.46769 * 105.37947 * 25.76542 * 5 4 2 9 9 C 1.37101 * 124.34416 * 162.85915 * 8 5 4 10 10 H 1.07993 * 120.00725 * 33.80716 * 9 8 5 11 11 C 1.38954 * 119.99270 * 214.08372 * 9 8 5 12 12 N 1.31409 * 120.00447 * 19.68456 * 11 9 8 13 13 Si 1.86800 * 119.99822 * 199.68397 * 11 9 8 14 14 H 1.48494 * 109.47193 * 59.99785 * 13 11 9 15 15 H 1.48501 * 109.47153 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47001 * 300.00090 * 13 11 9 17 17 C 1.34411 * 111.29991 * 342.59050 * 8 5 4 18 18 O 1.21294 * 124.93969 * 180.69537 * 17 8 5 19 19 H 1.09000 * 109.47103 * 177.00640 * 1 2 3 20 20 H 1.08998 * 109.47151 * 297.00601 * 1 2 3 21 21 H 1.08995 * 109.47086 * 57.01056 * 1 2 3 22 22 H 1.09001 * 110.96863 * 212.05600 * 4 2 1 23 23 H 1.09000 * 110.97465 * 335.78027 * 4 2 1 24 24 H 1.08998 * 109.47313 * 182.19681 * 6 5 4 25 25 H 1.09005 * 109.46441 * 302.19586 * 6 5 4 26 26 H 1.09004 * 109.46979 * 62.19371 * 6 5 4 27 27 H 1.08995 * 109.46916 * 302.64929 * 7 5 4 28 28 H 1.09005 * 109.46255 * 62.64830 * 7 5 4 29 29 H 1.08996 * 109.47197 * 182.64548 * 7 5 4 30 30 H 0.96998 * 120.00511 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0740 -0.7802 1.2191 5 6 2.2763 -2.1926 0.6222 6 6 1.0358 -3.0555 0.8618 7 6 3.5102 -2.8546 1.2389 8 7 2.4784 -1.9820 -0.8161 9 6 3.0195 -2.9123 -1.6655 10 1 2.8375 -3.9641 -1.5013 11 6 3.8069 -2.5021 -2.7344 12 7 4.3534 -1.3070 -2.7275 13 14 4.0886 -3.6494 -4.1814 14 1 2.7845 -3.9883 -4.8056 15 1 4.9579 -2.9800 -5.1821 16 1 4.7478 -4.8925 -3.7064 17 6 2.0595 -0.7623 -1.1946 18 8 2.0998 -0.3350 -2.3291 19 1 -0.3633 -1.0263 -0.0537 20 1 -0.3633 0.4666 0.9156 21 1 -0.3633 0.5595 -0.8619 22 1 3.0188 -0.3585 1.5622 23 1 1.3425 -0.8015 2.0268 24 1 1.2092 -4.0579 0.4703 25 1 0.8344 -3.1131 1.9315 26 1 0.1799 -2.6103 0.3543 27 1 4.3835 -2.2251 1.0687 28 1 3.3569 -2.9814 2.3106 29 1 3.6689 -3.8289 0.7768 30 1 4.9033 -1.0208 -3.4735 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685967831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = -56.669422 kcal Electronic energy + Delta-G solvation = -13483.066537 eV Core-core repulsion = 11277.426676 eV Total energy + Delta-G solvation = -2205.639861 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.29124 -37.28834 -35.33528 -33.31698 -31.99515 -28.40324 -27.91907 -26.42748 -23.80005 -21.17917 -20.82144 -18.12406 -17.08823 -16.29667 -16.18366 -15.65204 -14.96413 -14.68414 -14.11830 -13.80251 -13.65770 -13.41386 -13.15022 -12.82575 -12.78209 -12.67243 -12.47872 -12.40878 -12.14540 -11.87814 -11.58542 -11.09994 -10.82613 -9.92093 -9.19277 -8.20246 -5.89808 1.35381 1.43472 1.48275 2.29001 2.48975 3.23005 3.34902 3.73468 3.79585 4.06280 4.28501 4.43646 4.56846 4.71429 4.87526 4.90758 4.93107 4.97649 5.06151 5.11120 5.12245 5.29467 5.41170 5.49608 5.51898 5.66722 6.13256 6.96167 7.29841 7.64678 8.46328 8.88349 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040524 B = 0.015610 C = 0.013258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.790356 B = 1793.255497 C = 2111.448954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.078 0.922 4 C -0.105 4.105 5 C 0.126 3.874 6 C -0.142 4.142 7 C -0.127 4.127 8 N -0.458 5.458 9 C -0.345 4.345 10 H 0.087 0.913 11 C -0.004 4.004 12 N -0.867 5.867 13 Si 0.975 3.025 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.253 1.253 17 C 0.448 3.552 18 O -0.601 6.601 19 H 0.058 0.942 20 H 0.098 0.902 21 H 0.040 0.960 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.044 0.956 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -2.267 10.922 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 H 0.097 0.903 4 C -0.143 4.143 5 C 0.041 3.959 6 C -0.200 4.200 7 C -0.185 4.185 8 N -0.179 5.179 9 C -0.472 4.472 10 H 0.105 0.895 11 C -0.209 4.209 12 N -0.503 5.503 13 Si 0.799 3.201 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.177 1.177 17 C 0.236 3.764 18 O -0.484 6.484 19 H 0.077 0.923 20 H 0.116 0.884 21 H 0.059 0.941 22 H 0.090 0.910 23 H 0.139 0.861 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.242 -2.018 10.242 11.681 hybrid contribution 0.641 -0.217 -1.349 1.509 sum -4.601 -2.235 8.893 10.259 Atomic orbital electron populations 1.21658 0.91293 1.02334 1.02746 1.21852 0.98740 0.99347 0.94604 0.90348 1.22781 1.02288 0.92655 0.96567 1.21429 0.96510 0.96205 0.81755 1.22136 0.96072 0.98874 1.02905 1.21817 0.95980 0.99943 1.00769 1.44026 1.53286 1.13937 1.06608 1.19216 1.29607 0.89463 1.08947 0.89516 1.26146 0.94776 0.97699 1.02314 1.70059 1.28334 1.21141 1.30744 0.85297 0.77735 0.78661 0.78368 1.20429 1.21608 1.17744 1.21107 0.80988 0.84684 0.89571 1.90447 1.59642 1.73204 1.25120 0.92283 0.88370 0.94086 0.91000 0.86118 0.93681 0.88520 0.92879 0.95105 0.88948 0.93568 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 9.11 71.98 0.66 -3.19 16 2 C -0.12 -4.84 3.52 -10.80 -0.04 -4.88 16 3 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 4 C -0.11 -3.33 5.76 31.71 0.18 -3.15 16 5 C 0.13 4.71 0.96 4.12 0.00 4.71 16 6 C -0.14 -4.32 8.69 71.98 0.63 -3.69 16 7 C -0.13 -4.44 8.25 71.98 0.59 -3.84 16 8 N -0.46 -23.65 2.51 -588.09 -1.48 -25.12 16 9 C -0.34 -19.52 8.79 84.04 0.74 -18.78 16 10 H 0.09 4.63 7.91 -2.91 -0.02 4.61 16 11 C 0.00 -0.24 4.75 84.93 0.40 0.16 16 12 N -0.87 -55.64 11.28 21.66 0.24 -55.40 16 13 Si 0.97 46.75 29.60 68.60 2.03 48.78 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 16 H -0.25 -11.01 7.11 99.48 0.71 -10.30 16 17 C 0.45 24.51 6.64 87.90 0.58 25.10 16 18 O -0.60 -39.57 15.29 -3.07 -0.05 -39.61 16 19 H 0.06 1.84 5.60 -2.39 -0.01 1.83 16 20 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 21 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.07 2.26 7.92 -2.39 -0.02 2.24 16 23 H 0.12 2.66 7.66 -2.39 -0.02 2.64 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.05 1.66 5.62 -2.39 -0.01 1.65 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 29 H 0.05 1.71 7.74 -2.39 -0.02 1.70 16 30 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -77.22 244.20 5.61 -71.61 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.11 Total: 7.29 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 3.75 Total: -7.55 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.23 Total: -80.52 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.05 Total: -39.61 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -77.22 5.61 -71.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.941 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds