Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47001 * 2 1 4 4 H 1.09005 * 110.28834 * 56.81930 * 3 2 1 5 5 C 1.54478 * 110.24598 * 294.84383 * 3 2 1 6 6 C 1.54629 * 101.79719 * 215.60414 * 5 3 2 7 7 H 1.09004 * 110.48456 * 266.09704 * 6 5 3 8 8 C 1.53000 * 110.48616 * 143.45755 * 6 5 3 9 9 C 1.51275 * 104.19932 * 24.77680 * 6 5 3 10 10 O 1.21289 * 124.94516 * 163.71031 * 9 6 5 11 11 N 1.34424 * 110.11744 * 343.75072 * 9 6 5 12 12 C 1.37094 * 124.35511 * 179.58907 * 11 9 6 13 13 H 1.08003 * 119.99450 * 328.57894 * 12 11 9 14 14 C 1.38948 * 120.00263 * 148.57908 * 12 11 9 15 15 N 1.31411 * 119.99705 * 349.68606 * 14 12 11 16 16 Si 1.86797 * 119.99834 * 169.68386 * 14 12 11 17 17 H 1.48498 * 109.47413 * 90.00225 * 16 14 12 18 18 H 1.48504 * 109.47171 * 210.00272 * 16 14 12 19 19 H 1.48506 * 109.47429 * 329.99806 * 16 14 12 20 20 H 1.09004 * 109.46424 * 65.32229 * 1 2 3 21 21 H 1.08994 * 109.46858 * 185.31638 * 1 2 3 22 22 H 1.08990 * 109.47470 * 305.32263 * 1 2 3 23 23 H 1.08995 * 109.47676 * 239.99530 * 2 1 3 24 24 H 1.08999 * 109.46841 * 119.99241 * 2 1 3 25 25 H 1.08997 * 110.97481 * 97.46363 * 5 3 2 26 26 H 1.09001 * 110.96924 * 333.73917 * 5 3 2 27 27 H 1.09000 * 109.47494 * 59.99347 * 8 6 5 28 28 H 1.08999 * 109.47135 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47143 * 299.99901 * 8 6 5 30 30 H 0.96997 * 119.99428 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6384 1.9854 0.8557 5 6 1.6441 2.1495 -1.3152 6 6 2.8705 3.0566 -1.5681 7 1 2.7015 4.0508 -1.1544 8 6 3.1731 3.1427 -3.0654 9 6 4.0006 2.3646 -0.8385 10 8 5.1799 2.5895 -1.0114 11 7 3.5078 1.4634 0.0287 12 6 4.2769 0.6656 0.8359 13 1 5.2517 0.3408 0.5032 14 6 3.8022 0.2749 2.0820 15 7 2.7155 0.8265 2.5736 16 14 4.7089 -1.0343 3.0582 17 1 5.7277 -0.3891 3.9247 18 1 3.7418 -1.7806 3.9028 19 1 5.3779 -1.9745 2.1234 20 1 -0.3632 0.4291 -0.9339 21 1 -0.3633 -1.0232 0.0952 22 1 -0.3634 0.5941 0.8384 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 0.7401 2.7438 -1.1819 26 1 1.5188 1.4286 -2.1232 27 1 2.3112 3.5588 -3.5870 28 1 4.0389 3.7855 -3.2247 29 1 3.3846 2.1455 -3.4513 30 1 2.3840 0.5535 3.4433 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687714407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = -47.371370 kcal Electronic energy + Delta-G solvation = -13238.355168 eV Core-core repulsion = 11033.118502 eV Total energy + Delta-G solvation = -2205.236667 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.38872 -35.55000 -33.65392 -32.09752 -31.15898 -27.43072 -25.07836 -24.11109 -21.71307 -19.81222 -18.68440 -16.85890 -15.59675 -15.14154 -14.18531 -13.89599 -13.67913 -12.97917 -12.72337 -12.52401 -11.92285 -11.86048 -11.58715 -11.39395 -11.14534 -10.95784 -10.64286 -10.44738 -10.34982 -10.22469 -9.98087 -9.59166 -8.91083 -8.22456 -7.51262 -6.29483 -3.92472 3.16840 3.24979 3.29581 3.97585 4.15676 4.99641 5.11555 5.35328 5.41538 5.47755 5.86938 5.93455 6.00572 6.08377 6.13240 6.21905 6.29654 6.52221 6.54668 6.62493 6.72274 6.77332 6.83716 7.36197 7.38032 7.57727 8.11520 8.55175 9.18648 9.36253 10.13560 10.75765 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035105 B = 0.015560 C = 0.011678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.408416 B = 1799.059020 C = 2397.056589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.148 3.852 4 H 0.089 0.911 5 C -0.131 4.131 6 C -0.125 4.125 7 H 0.089 0.911 8 C -0.126 4.126 9 C 0.459 3.541 10 O -0.585 6.585 11 N -0.439 5.439 12 C -0.302 4.302 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.874 5.874 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.270 1.270 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.053 0.947 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 -0.380 -4.394 7.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.044 3.956 4 H 0.107 0.893 5 C -0.170 4.170 6 C -0.147 4.147 7 H 0.107 0.893 8 C -0.184 4.184 9 C 0.246 3.754 10 O -0.470 6.470 11 N -0.157 5.157 12 C -0.430 4.430 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.513 5.513 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.194 1.194 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.888 -0.364 -4.227 7.257 hybrid contribution 0.233 -0.622 0.681 0.951 sum -5.654 -0.986 -3.546 6.747 Atomic orbital electron populations 1.21686 0.97028 1.00436 1.00816 1.21647 0.93829 0.97175 1.02611 1.21508 0.82312 0.96217 0.95552 0.89298 1.22879 0.96943 0.98418 0.98713 1.21827 0.96127 0.99912 0.96865 0.89278 1.21542 1.00882 1.01836 0.94115 1.20400 0.88848 0.81719 0.84408 1.90503 1.17703 1.68374 1.70424 1.43836 1.05016 1.32501 1.34385 1.19358 1.01389 1.25827 0.96444 0.89101 1.25330 0.96689 0.98404 0.96183 1.69901 1.22588 1.40592 1.18185 0.86050 0.79170 0.80661 0.79593 1.20273 1.20760 1.19437 0.93785 0.93859 0.92781 0.93791 0.89500 0.91038 0.91224 0.92988 0.92348 0.92924 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.66 37.16 0.36 -1.96 16 2 C -0.11 -2.35 4.96 -26.73 -0.13 -2.48 16 3 C 0.15 3.27 2.25 -66.98 -0.15 3.12 16 4 H 0.09 2.13 7.15 -51.93 -0.37 1.76 16 5 C -0.13 -2.35 5.36 -25.10 -0.13 -2.49 16 6 C -0.13 -2.47 3.53 -90.63 -0.32 -2.79 16 7 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 8 C -0.13 -2.12 9.07 37.16 0.34 -1.78 16 9 C 0.46 11.85 7.40 -10.86 -0.08 11.77 16 10 O -0.59 -17.15 17.53 5.55 0.10 -17.05 16 11 N -0.44 -11.52 2.87 -106.55 -0.31 -11.82 16 12 C -0.30 -8.47 9.11 -14.94 -0.14 -8.60 16 13 H 0.09 2.65 7.85 -52.48 -0.41 2.24 16 14 C 0.04 0.99 4.06 -17.47 -0.07 0.92 16 15 N -0.87 -22.97 10.43 55.50 0.58 -22.39 16 16 Si 0.92 20.61 29.56 -169.99 -5.03 15.59 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 20 H 0.04 0.63 7.60 -51.93 -0.39 0.24 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 24 H 0.09 2.03 5.56 -51.93 -0.29 1.74 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.16 7.64 -51.93 -0.40 0.77 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 246.29 15.07 3.71 3.71 Total: -1.00 -30.39 246.29 -5.65 -36.04 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.38 Total: 0.23 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.33 Total: -4.30 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.27 Total: -34.21 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.10 Total: -17.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.39 -5.65 -36.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.336 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds