Wall clock time and date at job start Mon Mar 30 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47001 * 2 1 4 4 H 1.09005 * 110.28834 * 56.81930 * 3 2 1 5 5 C 1.54478 * 110.24598 * 294.84383 * 3 2 1 6 6 C 1.54629 * 101.79719 * 215.60414 * 5 3 2 7 7 H 1.09004 * 110.48456 * 266.09704 * 6 5 3 8 8 C 1.53000 * 110.48616 * 143.45755 * 6 5 3 9 9 C 1.51275 * 104.19932 * 24.77680 * 6 5 3 10 10 O 1.21289 * 124.94516 * 163.71031 * 9 6 5 11 11 N 1.34424 * 110.11744 * 343.75072 * 9 6 5 12 12 C 1.37094 * 124.35511 * 179.58907 * 11 9 6 13 13 H 1.08003 * 119.99450 * 328.57894 * 12 11 9 14 14 C 1.38948 * 120.00263 * 148.57908 * 12 11 9 15 15 N 1.31411 * 119.99705 * 349.68606 * 14 12 11 16 16 Si 1.86797 * 119.99834 * 169.68386 * 14 12 11 17 17 H 1.48498 * 109.47413 * 90.00225 * 16 14 12 18 18 H 1.48504 * 109.47171 * 210.00272 * 16 14 12 19 19 H 1.48506 * 109.47429 * 329.99806 * 16 14 12 20 20 H 1.09004 * 109.46424 * 65.32229 * 1 2 3 21 21 H 1.08994 * 109.46858 * 185.31638 * 1 2 3 22 22 H 1.08990 * 109.47470 * 305.32263 * 1 2 3 23 23 H 1.08995 * 109.47676 * 239.99530 * 2 1 3 24 24 H 1.08999 * 109.46841 * 119.99241 * 2 1 3 25 25 H 1.08997 * 110.97481 * 97.46363 * 5 3 2 26 26 H 1.09001 * 110.96924 * 333.73917 * 5 3 2 27 27 H 1.09000 * 109.47494 * 59.99347 * 8 6 5 28 28 H 1.08999 * 109.47135 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47143 * 299.99901 * 8 6 5 30 30 H 0.96997 * 119.99428 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6384 1.9854 0.8557 5 6 1.6441 2.1495 -1.3152 6 6 2.8705 3.0566 -1.5681 7 1 2.7015 4.0508 -1.1544 8 6 3.1731 3.1427 -3.0654 9 6 4.0006 2.3646 -0.8385 10 8 5.1799 2.5895 -1.0114 11 7 3.5078 1.4634 0.0287 12 6 4.2769 0.6656 0.8359 13 1 5.2517 0.3408 0.5032 14 6 3.8022 0.2749 2.0820 15 7 2.7155 0.8265 2.5736 16 14 4.7089 -1.0343 3.0582 17 1 5.7277 -0.3891 3.9247 18 1 3.7418 -1.7806 3.9028 19 1 5.3779 -1.9745 2.1234 20 1 -0.3632 0.4291 -0.9339 21 1 -0.3633 -1.0232 0.0952 22 1 -0.3634 0.5941 0.8384 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 0.7401 2.7438 -1.1819 26 1 1.5188 1.4286 -2.1232 27 1 2.3112 3.5588 -3.5870 28 1 4.0389 3.7855 -3.2247 29 1 3.3846 2.1455 -3.4513 30 1 2.3840 0.5535 3.4433 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687714407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:55 Heat of formation + Delta-G solvation = -66.773294 kcal Electronic energy + Delta-G solvation = -13239.196499 eV Core-core repulsion = 11033.118502 eV Total energy + Delta-G solvation = -2206.077998 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21058 -37.50956 -35.46920 -33.72097 -33.05640 -28.99898 -26.97727 -25.68396 -23.34012 -21.50777 -20.50663 -18.82731 -17.33867 -17.16676 -16.03490 -15.49988 -15.41410 -14.75233 -14.37224 -14.13961 -13.52342 -13.42922 -13.24256 -12.99784 -12.78169 -12.66734 -12.26212 -12.16114 -11.99406 -11.88303 -11.63757 -11.21851 -10.80798 -10.20474 -9.53393 -8.32551 -6.04473 1.34773 1.38407 1.49839 2.02482 2.26871 3.05980 3.23031 3.72553 3.84957 4.02055 4.42550 4.47728 4.55717 4.61500 4.76488 4.86644 4.92494 5.05738 5.13087 5.17172 5.28632 5.34139 5.38510 5.43758 5.69614 5.76184 6.06521 6.54494 7.16062 7.36239 8.12214 8.70652 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035105 B = 0.015560 C = 0.011678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.408416 B = 1799.059020 C = 2397.056589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 C 0.142 3.858 4 H 0.067 0.933 5 C -0.114 4.114 6 C -0.117 4.117 7 H 0.102 0.898 8 C -0.120 4.120 9 C 0.430 3.570 10 O -0.638 6.638 11 N -0.453 5.453 12 C -0.345 4.345 13 H 0.062 0.938 14 C 0.013 3.987 15 N -0.882 5.882 16 Si 0.978 3.022 17 H -0.278 1.278 18 H -0.264 1.264 19 H -0.270 1.270 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.041 0.959 24 H 0.052 0.948 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.619 -0.515 -4.931 9.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.149 4.149 3 C 0.038 3.962 4 H 0.085 0.915 5 C -0.152 4.152 6 C -0.139 4.139 7 H 0.120 0.880 8 C -0.177 4.177 9 C 0.219 3.781 10 O -0.527 6.527 11 N -0.170 5.170 12 C -0.473 4.473 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.519 5.519 16 Si 0.801 3.199 17 H -0.204 1.204 18 H -0.188 1.188 19 H -0.195 1.195 20 H 0.091 0.909 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.130 0.870 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.171 -0.500 -4.760 9.470 hybrid contribution 0.945 -0.571 0.908 1.429 sum -7.227 -1.071 -3.853 8.259 Atomic orbital electron populations 1.21605 0.93452 1.01683 1.02174 1.21566 0.96835 0.95717 1.00775 1.21671 0.79777 0.97467 0.97237 0.91489 1.22896 0.97406 0.98324 0.96566 1.21853 0.94035 0.99981 0.98001 0.87986 1.21535 1.02434 1.01605 0.92157 1.21609 0.89765 0.81827 0.84849 1.90440 1.20288 1.69930 1.72058 1.44223 1.06904 1.32025 1.33880 1.19307 1.01516 1.28196 0.98255 0.92019 1.25973 0.97262 0.99559 0.96270 1.69963 1.22831 1.40679 1.18432 0.85178 0.78299 0.78270 0.78119 1.20351 1.18833 1.19494 0.90913 0.92415 0.93187 0.94045 0.92968 0.87037 0.89381 0.88469 0.93423 0.93666 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.66 71.98 0.70 -3.21 16 2 C -0.11 -4.42 4.96 30.59 0.15 -4.27 16 3 C 0.14 6.12 2.25 45.43 0.10 6.22 16 4 H 0.07 3.17 7.15 -2.38 -0.02 3.16 16 5 C -0.11 -3.70 5.36 31.65 0.17 -3.53 16 6 C -0.12 -4.40 3.53 -10.80 -0.04 -4.44 16 7 H 0.10 3.57 8.14 -2.38 -0.02 3.55 16 8 C -0.12 -3.71 9.07 71.98 0.65 -3.06 16 9 C 0.43 22.70 7.40 87.89 0.65 23.35 16 10 O -0.64 -39.05 17.53 -3.06 -0.05 -39.11 16 11 N -0.45 -24.31 2.87 -609.59 -1.75 -26.05 16 12 C -0.34 -20.08 9.11 84.04 0.77 -19.31 16 13 H 0.06 3.84 7.85 -2.91 -0.02 3.81 16 14 C 0.01 0.67 4.06 84.93 0.34 1.02 16 15 N -0.88 -46.49 10.43 21.66 0.23 -46.26 16 16 Si 0.98 42.65 29.56 68.60 2.03 44.67 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H 0.07 1.75 7.60 -2.38 -0.02 1.73 16 21 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 1.63 8.09 -2.39 -0.02 1.61 16 24 H 0.05 2.43 5.56 -2.39 -0.01 2.42 16 25 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.09 2.56 7.64 -2.39 -0.02 2.54 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -69.01 246.29 5.05 -63.95 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.11 Total: 10.02 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 3.49 Total: -7.22 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -1.52 Total: -72.32 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.05 Total: -39.11 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -69.01 5.05 -63.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.819 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds