Wall clock time and date at job start Mon Mar 30 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46988 * 2 1 4 4 H 1.08997 * 110.29121 * 55.51432 * 3 2 1 5 5 C 1.54473 * 110.24454 * 177.49750 * 3 2 1 6 6 C 1.54629 * 101.76968 * 93.58114 * 5 3 2 7 7 H 1.08998 * 110.49068 * 143.60752 * 6 5 3 8 8 C 1.53003 * 110.48791 * 266.12378 * 6 5 3 9 9 C 1.51294 * 104.25604 * 24.57818 * 6 5 3 10 10 O 1.21288 * 124.94623 * 164.01789 * 9 6 5 11 11 N 1.34426 * 110.10815 * 344.14808 * 9 6 5 12 12 C 1.37099 * 124.34725 * 179.43785 * 11 9 6 13 13 H 1.08003 * 119.99756 * 29.82620 * 12 11 9 14 14 C 1.38948 * 119.99842 * 209.83608 * 12 11 9 15 15 N 1.31411 * 120.00279 * 17.36548 * 14 12 11 16 16 Si 1.86806 * 119.99733 * 197.36658 * 14 12 11 17 17 H 1.48495 * 109.47066 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47282 * 299.99822 * 16 14 12 19 19 H 1.48498 * 109.47004 * 59.99835 * 16 14 12 20 20 H 1.08994 * 109.47089 * 60.00610 * 1 2 3 21 21 H 1.09000 * 109.46878 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47072 * 300.00598 * 1 2 3 23 23 H 1.08994 * 109.47370 * 239.99717 * 2 1 3 24 24 H 1.09004 * 109.46972 * 119.99347 * 2 1 3 25 25 H 1.09000 * 110.97150 * 211.70013 * 5 3 2 26 26 H 1.08995 * 110.97438 * 335.46067 * 5 3 2 27 27 H 1.08997 * 109.47326 * 59.99114 * 8 6 5 28 28 H 1.08998 * 109.47416 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.46533 * 299.99764 * 8 6 5 30 30 H 0.96999 * 120.00325 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6202 1.9918 0.8427 5 6 3.5833 1.4639 0.0633 6 6 3.9593 1.5408 -1.4346 7 1 4.8397 2.1679 -1.5753 8 6 4.2061 0.1396 -1.9974 9 6 2.7471 2.1634 -2.0916 10 8 2.7313 2.6475 -3.2036 11 7 1.6907 2.1046 -1.2624 12 6 0.4454 2.5948 -1.5600 13 1 0.1047 2.6174 -2.5847 14 6 -0.3782 3.0628 -0.5435 15 7 0.1311 3.3580 0.6314 16 14 -2.2094 3.2724 -0.8470 17 1 -2.8606 3.7812 0.3867 18 1 -2.4203 4.2400 -1.9536 19 1 -2.8033 1.9621 -1.2154 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.9396 2.3428 0.6005 26 1 3.9679 0.5498 0.5155 27 1 3.3021 -0.4597 -1.8894 28 1 4.4691 0.2130 -3.0526 29 1 5.0225 -0.3327 -1.4511 30 1 -0.4439 3.6843 1.3412 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687714408.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:57 Heat of formation + Delta-G solvation = -63.313911 kcal Electronic energy + Delta-G solvation = -13448.103016 eV Core-core repulsion = 11242.175029 eV Total energy + Delta-G solvation = -2205.927987 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.32569 -37.48450 -35.50130 -33.37070 -32.86759 -29.44143 -26.96275 -25.79354 -23.07718 -21.87516 -20.49896 -18.79856 -17.38374 -16.49061 -16.15702 -15.96012 -15.09190 -14.72923 -14.25169 -14.10329 -13.90320 -13.37914 -13.24662 -13.04518 -12.88805 -12.55006 -12.40126 -12.17186 -12.02302 -11.64899 -11.45805 -11.19187 -10.93575 -10.20459 -9.47894 -8.27214 -5.99487 1.35655 1.39400 1.47805 2.02439 2.28084 3.08308 3.28033 3.73351 3.81780 4.06224 4.33068 4.47934 4.58228 4.60685 4.81124 4.91120 4.91889 5.07554 5.12680 5.17896 5.26786 5.33512 5.39896 5.50627 5.71239 5.75267 6.12524 6.58451 7.16753 7.40014 8.15342 8.69998 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041819 B = 0.015191 C = 0.013309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.386582 B = 1842.796123 C = 2103.350369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.103 3.897 4 H 0.105 0.895 5 C -0.113 4.113 6 C -0.116 4.116 7 H 0.095 0.905 8 C -0.126 4.126 9 C 0.430 3.570 10 O -0.644 6.644 11 N -0.440 5.440 12 C -0.336 4.336 13 H 0.060 0.940 14 C 0.022 3.978 15 N -0.880 5.880 16 Si 0.965 3.035 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.262 1.262 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.038 0.962 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 -7.786 4.727 9.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.001 4.001 4 H 0.122 0.878 5 C -0.151 4.151 6 C -0.137 4.137 7 H 0.113 0.887 8 C -0.184 4.184 9 C 0.220 3.780 10 O -0.533 6.533 11 N -0.156 5.156 12 C -0.464 4.464 13 H 0.078 0.922 14 C -0.181 4.181 15 N -0.518 5.518 16 Si 0.789 3.211 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.187 1.187 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.195 -7.456 4.420 9.238 hybrid contribution -1.089 0.643 -0.411 1.330 sum 2.106 -6.813 4.010 8.181 Atomic orbital electron populations 1.21739 0.96706 1.00135 1.01759 1.21857 0.96144 0.95422 1.01987 1.22145 0.94833 0.93662 0.89444 0.87784 1.22732 0.94034 1.04119 0.94198 1.21804 0.95975 0.99369 0.96581 0.88714 1.21701 1.02727 0.93225 1.00730 1.21640 0.87064 0.82853 0.86471 1.90443 1.86000 1.53909 1.22997 1.44036 1.07969 1.48054 1.15581 1.19159 0.91552 1.41599 0.94080 0.92187 1.25799 1.03238 0.94147 0.94955 1.69794 1.36847 1.40763 1.04353 0.85435 0.78591 0.79104 0.77991 1.19310 1.20482 1.18711 0.93539 0.92430 0.94235 0.92464 0.89231 0.91011 0.86429 0.92686 0.93456 0.88312 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 8.87 71.98 0.64 -4.99 16 2 C -0.12 -4.12 5.45 30.60 0.17 -3.95 16 3 C 0.10 4.32 2.65 45.44 0.12 4.44 16 4 H 0.10 4.91 5.58 -2.39 -0.01 4.90 16 5 C -0.11 -3.78 6.24 31.65 0.20 -3.58 16 6 C -0.12 -4.34 3.54 -10.80 -0.04 -4.38 16 7 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 8 C -0.13 -3.82 9.09 71.98 0.65 -3.16 16 9 C 0.43 22.52 7.28 87.90 0.64 23.16 16 10 O -0.64 -39.59 17.69 -3.06 -0.05 -39.64 16 11 N -0.44 -22.95 2.62 -609.72 -1.60 -24.55 16 12 C -0.34 -19.09 7.61 84.04 0.64 -18.45 16 13 H 0.06 3.68 7.89 -2.91 -0.02 3.66 16 14 C 0.02 1.16 3.99 84.93 0.34 1.50 16 15 N -0.88 -45.83 11.05 21.66 0.24 -45.59 16 16 Si 0.97 41.83 29.59 68.60 2.03 43.86 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 20 H 0.05 2.10 5.65 -2.39 -0.01 2.09 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.99 5.64 -2.39 -0.01 1.98 16 24 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.12 2.89 7.65 -2.39 -0.02 2.87 16 27 H 0.05 1.72 5.61 -2.39 -0.01 1.70 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -67.62 240.32 5.09 -62.53 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.12 Total: 12.80 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 3.36 Total: -9.41 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -1.36 Total: -70.13 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.05 Total: -39.64 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -67.62 5.09 -62.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714408.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.786 kcal (2) G-P(sol) polarization free energy of solvation -67.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds