Wall clock time and date at job start Mon Mar 30 2020 02:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47180 * 2 1 4 4 H 1.08996 * 110.21376 * 57.34925 * 3 2 1 5 5 C 1.54475 * 110.24709 * 179.37256 * 3 2 1 6 6 C 1.54629 * 101.76522 * 93.58631 * 5 3 2 7 7 H 1.09001 * 110.48820 * 265.98952 * 6 5 3 8 8 C 1.52998 * 110.48901 * 143.47198 * 6 5 3 9 9 C 1.51287 * 104.19261 * 24.79743 * 6 5 3 10 10 O 1.21293 * 124.93994 * 163.77176 * 9 6 5 11 11 N 1.34417 * 110.11856 * 343.74817 * 9 6 5 12 12 C 1.37095 * 124.35082 * 179.86001 * 11 9 6 13 13 H 1.07995 * 120.00093 * 140.35825 * 12 11 9 14 14 C 1.38945 * 120.00080 * 320.36211 * 12 11 9 15 15 N 1.31409 * 120.00142 * 161.81332 * 14 12 11 16 16 Si 1.86804 * 120.00077 * 341.81512 * 14 12 11 17 17 H 1.48498 * 109.47158 * 94.31900 * 16 14 12 18 18 H 1.48500 * 109.47252 * 214.32569 * 16 14 12 19 19 H 1.48500 * 109.46729 * 334.32282 * 16 14 12 20 20 H 1.09008 * 109.46776 * 188.20806 * 1 2 3 21 21 H 1.08996 * 109.47269 * 308.20821 * 1 2 3 22 22 H 1.08999 * 109.47231 * 68.21384 * 1 2 3 23 23 H 1.09002 * 109.47209 * 240.00028 * 2 1 3 24 24 H 1.08998 * 109.47244 * 120.00226 * 2 1 3 25 25 H 1.09001 * 110.96683 * 211.70388 * 5 3 2 26 26 H 1.08996 * 110.97053 * 335.46923 * 5 3 2 27 27 H 1.09003 * 109.46824 * 59.99867 * 8 6 5 28 28 H 1.08998 * 109.47346 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47264 * 300.00666 * 8 6 5 30 30 H 0.97003 * 119.99950 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6453 1.9815 0.8612 5 6 3.5845 1.4635 0.0159 6 6 3.9141 1.5569 -1.4920 7 1 4.0796 0.5633 -1.9086 8 6 5.1413 2.4422 -1.7181 9 6 2.6837 2.1917 -2.1020 10 8 2.6353 2.6933 -3.2052 11 7 1.6519 2.1184 -1.2436 12 6 0.3968 2.6071 -1.4993 13 1 -0.4737 2.0506 -1.1849 14 6 0.2447 3.8183 -2.1630 15 7 -0.9050 4.1209 -2.7228 16 14 1.6745 5.0165 -2.2595 17 1 2.4148 4.8026 -3.5289 18 1 1.1581 6.4081 -2.2160 19 1 2.5875 4.7912 -1.1101 20 1 -0.3633 -1.0172 0.1467 21 1 -0.3633 0.6356 0.8075 22 1 -0.3633 0.3814 -0.9542 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.9573 2.3366 0.5515 26 1 3.9827 0.5445 0.4459 27 1 5.9974 2.0172 -1.1941 28 1 5.3583 2.4969 -2.7849 29 1 4.9422 3.4436 -1.3363 30 1 -1.0111 4.9663 -3.1864 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687714409.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:59 Heat of formation + Delta-G solvation = -36.241236 kcal Electronic energy + Delta-G solvation = -13413.339223 eV Core-core repulsion = 11208.585195 eV Total energy + Delta-G solvation = -2204.754028 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82973 -35.78072 -33.65741 -32.30719 -31.16060 -28.18667 -24.99548 -23.99458 -21.97177 -20.15009 -19.13865 -16.98960 -15.65098 -15.41585 -14.22550 -13.95999 -13.73656 -13.19931 -12.76416 -12.66787 -12.49260 -12.15714 -11.60611 -11.42730 -11.27820 -11.05422 -10.84922 -10.79881 -10.23786 -10.06473 -9.83210 -9.74090 -8.70664 -8.23779 -7.59768 -6.20581 -3.94361 3.35888 3.50832 3.70862 3.91322 4.56086 4.64499 4.99181 5.04138 5.21550 5.29969 5.52960 5.69901 5.77707 5.88045 5.95754 6.06298 6.11539 6.25246 6.30366 6.41037 6.45478 6.51026 6.62266 6.77487 6.97557 7.83592 7.96330 8.71379 8.93357 9.40136 9.93722 10.84891 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.021507 C = 0.014142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.762828 B = 1301.611870 C = 1979.476278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.118 3.882 4 H 0.078 0.922 5 C -0.127 4.127 6 C -0.126 4.126 7 H 0.094 0.906 8 C -0.131 4.131 9 C 0.451 3.549 10 O -0.549 6.549 11 N -0.456 5.456 12 C -0.339 4.339 13 H 0.108 0.892 14 C 0.080 3.920 15 N -0.869 5.869 16 Si 0.907 3.093 17 H -0.250 1.250 18 H -0.310 1.310 19 H -0.281 1.281 20 H 0.039 0.961 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.088 -5.904 7.031 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C 0.013 3.987 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.148 4.148 7 H 0.112 0.888 8 C -0.189 4.189 9 C 0.240 3.760 10 O -0.432 6.432 11 N -0.176 5.176 12 C -0.465 4.465 13 H 0.125 0.875 14 C -0.128 4.128 15 N -0.504 5.504 16 Si 0.737 3.263 17 H -0.176 1.176 18 H -0.239 1.239 19 H -0.207 1.207 20 H 0.058 0.942 21 H 0.070 0.930 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.833 -5.513 6.378 11.508 hybrid contribution 0.558 0.618 0.068 0.836 sum 8.391 -4.894 6.446 11.659 Atomic orbital electron populations 1.21911 0.95332 0.99891 1.03980 1.21813 0.97105 0.96145 1.00973 1.21744 0.93166 0.93627 0.90115 0.90401 1.22731 0.95637 1.02365 0.95719 1.21842 0.95948 1.00694 0.96274 0.88836 1.21592 0.95926 0.99195 1.02181 1.20542 0.86282 0.83502 0.85643 1.90547 1.84036 1.48203 1.20412 1.43966 1.10178 1.51404 1.12097 1.19021 0.82037 1.04675 1.40732 0.87469 1.25319 0.96703 0.97167 0.93595 1.69729 1.25517 1.23772 1.31397 0.86368 0.82273 0.77300 0.80323 1.17582 1.23910 1.20716 0.94229 0.92965 0.90275 0.92252 0.92259 0.90798 0.90342 0.92631 0.92031 0.92914 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.90 37.16 0.33 -2.32 16 2 C -0.12 -1.97 5.55 -26.73 -0.15 -2.11 16 3 C 0.12 2.20 3.13 -67.01 -0.21 1.99 16 4 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 5 C -0.13 -1.98 6.22 -25.10 -0.16 -2.13 16 6 C -0.13 -2.30 3.53 -90.63 -0.32 -2.62 16 7 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 8 C -0.13 -2.17 9.07 37.16 0.34 -1.83 16 9 C 0.45 11.14 5.69 -10.86 -0.06 11.08 16 10 O -0.55 -15.80 13.12 5.55 0.07 -15.72 16 11 N -0.46 -11.11 2.26 -106.59 -0.24 -11.35 16 12 C -0.34 -9.53 9.30 -14.94 -0.14 -9.67 16 13 H 0.11 3.04 5.58 -52.49 -0.29 2.75 16 14 C 0.08 2.40 5.18 -17.47 -0.09 2.31 16 15 N -0.87 -26.74 13.96 55.50 0.77 -25.97 16 16 Si 0.91 24.96 24.67 -169.99 -4.19 20.76 16 17 H -0.25 -7.29 6.20 56.52 0.35 -6.94 16 18 H -0.31 -8.31 7.11 56.52 0.40 -7.90 16 19 H -0.28 -7.48 7.10 56.52 0.40 -7.08 16 20 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 21 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 22 H 0.08 1.64 5.67 -51.93 -0.29 1.35 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.11 7.91 -51.93 -0.41 0.70 16 26 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 239.61 15.07 3.61 3.61 Total: -1.00 -33.06 239.61 -4.83 -37.89 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.40 Total: -3.92 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.46 Total: -5.30 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.53 Total: -37.32 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.07 Total: -15.72 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.19 Total: 20.76 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.06 -4.83 -37.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714409.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.649 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds