Wall clock time and date at job start Mon Mar 30 2020 02:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47180 * 2 1 4 4 H 1.08996 * 110.21376 * 57.34925 * 3 2 1 5 5 C 1.54475 * 110.24709 * 179.37256 * 3 2 1 6 6 C 1.54629 * 101.76522 * 93.58631 * 5 3 2 7 7 H 1.09001 * 110.48820 * 265.98952 * 6 5 3 8 8 C 1.52998 * 110.48901 * 143.47198 * 6 5 3 9 9 C 1.51287 * 104.19261 * 24.79743 * 6 5 3 10 10 O 1.21293 * 124.93994 * 163.77176 * 9 6 5 11 11 N 1.34417 * 110.11856 * 343.74817 * 9 6 5 12 12 C 1.37095 * 124.35082 * 179.86001 * 11 9 6 13 13 H 1.07995 * 120.00093 * 140.35825 * 12 11 9 14 14 C 1.38945 * 120.00080 * 320.36211 * 12 11 9 15 15 N 1.31409 * 120.00142 * 161.81332 * 14 12 11 16 16 Si 1.86804 * 120.00077 * 341.81512 * 14 12 11 17 17 H 1.48498 * 109.47158 * 94.31900 * 16 14 12 18 18 H 1.48500 * 109.47252 * 214.32569 * 16 14 12 19 19 H 1.48500 * 109.46729 * 334.32282 * 16 14 12 20 20 H 1.09008 * 109.46776 * 188.20806 * 1 2 3 21 21 H 1.08996 * 109.47269 * 308.20821 * 1 2 3 22 22 H 1.08999 * 109.47231 * 68.21384 * 1 2 3 23 23 H 1.09002 * 109.47209 * 240.00028 * 2 1 3 24 24 H 1.08998 * 109.47244 * 120.00226 * 2 1 3 25 25 H 1.09001 * 110.96683 * 211.70388 * 5 3 2 26 26 H 1.08996 * 110.97053 * 335.46923 * 5 3 2 27 27 H 1.09003 * 109.46824 * 59.99867 * 8 6 5 28 28 H 1.08998 * 109.47346 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47264 * 300.00666 * 8 6 5 30 30 H 0.97003 * 119.99950 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6453 1.9815 0.8612 5 6 3.5845 1.4635 0.0159 6 6 3.9141 1.5569 -1.4920 7 1 4.0796 0.5633 -1.9086 8 6 5.1413 2.4422 -1.7181 9 6 2.6837 2.1917 -2.1020 10 8 2.6353 2.6933 -3.2052 11 7 1.6519 2.1184 -1.2436 12 6 0.3968 2.6071 -1.4993 13 1 -0.4737 2.0506 -1.1849 14 6 0.2447 3.8183 -2.1630 15 7 -0.9050 4.1209 -2.7228 16 14 1.6745 5.0165 -2.2595 17 1 2.4148 4.8026 -3.5289 18 1 1.1581 6.4081 -2.2160 19 1 2.5875 4.7912 -1.1101 20 1 -0.3633 -1.0172 0.1467 21 1 -0.3633 0.6356 0.8075 22 1 -0.3633 0.3814 -0.9542 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.9573 2.3366 0.5515 26 1 3.9827 0.5445 0.4459 27 1 5.9974 2.0172 -1.1941 28 1 5.3583 2.4969 -2.7849 29 1 4.9422 3.4436 -1.3363 30 1 -1.0111 4.9663 -3.1864 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687714409.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:59 Heat of formation + Delta-G solvation = -59.323399 kcal Electronic energy + Delta-G solvation = -13414.340141 eV Core-core repulsion = 11208.585195 eV Total energy + Delta-G solvation = -2205.754946 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.54453 -37.61666 -35.47721 -33.97426 -32.99811 -29.65372 -26.89182 -25.49032 -23.47651 -21.67662 -20.97513 -18.96061 -17.54457 -16.96201 -16.07558 -15.90783 -15.24194 -14.86101 -14.58826 -14.33123 -14.06944 -13.76967 -13.09402 -12.97659 -12.88974 -12.69523 -12.58111 -12.35127 -12.03286 -11.60049 -11.41352 -11.37133 -10.90201 -10.22881 -9.57454 -8.46928 -6.17222 1.17561 1.29506 1.46576 1.94837 2.38247 2.82446 3.05922 3.61345 3.68514 3.97987 4.17325 4.38106 4.43420 4.54877 4.73114 4.77150 4.85660 4.93358 5.03961 5.13405 5.17182 5.20823 5.32551 5.44877 5.52731 5.69380 5.92904 6.66933 6.91064 7.26274 7.94299 8.62004 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.021507 C = 0.014142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.762828 B = 1301.611870 C = 1979.476278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C 0.106 3.894 4 H 0.080 0.920 5 C -0.110 4.110 6 C -0.119 4.119 7 H 0.119 0.881 8 C -0.129 4.129 9 C 0.432 3.568 10 O -0.602 6.602 11 N -0.473 5.473 12 C -0.329 4.329 13 H 0.095 0.905 14 C 0.029 3.971 15 N -0.911 5.911 16 Si 0.953 3.047 17 H -0.281 1.281 18 H -0.304 1.304 19 H -0.267 1.267 20 H 0.065 0.935 21 H 0.049 0.951 22 H 0.031 0.969 23 H 0.055 0.945 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.604 -7.717 9.450 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C 0.003 3.997 4 H 0.098 0.902 5 C -0.148 4.148 6 C -0.140 4.140 7 H 0.137 0.863 8 C -0.187 4.187 9 C 0.223 3.777 10 O -0.489 6.489 11 N -0.194 5.194 12 C -0.456 4.456 13 H 0.112 0.888 14 C -0.174 4.174 15 N -0.550 5.550 16 Si 0.784 3.216 17 H -0.208 1.208 18 H -0.234 1.234 19 H -0.191 1.191 20 H 0.084 0.916 21 H 0.068 0.932 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.126 0.874 25 H 0.102 0.898 26 H 0.149 0.851 27 H 0.122 0.878 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.363 -7.342 8.856 15.483 hybrid contribution -0.234 1.044 -0.679 1.267 sum 10.129 -6.298 8.177 14.461 Atomic orbital electron populations 1.21850 0.96825 1.01142 1.01168 1.21816 0.95714 0.94698 1.03091 1.22145 0.95916 0.94411 0.87232 0.90182 1.22817 0.92648 1.05566 0.93732 1.21921 0.92971 1.01336 0.97804 0.86347 1.21623 0.96795 0.98306 1.01948 1.21852 0.88463 0.82374 0.85055 1.90504 1.85318 1.50254 1.22831 1.44283 1.08923 1.51425 1.14720 1.19114 0.83866 1.03695 1.38895 0.88758 1.25927 0.98014 0.99030 0.94448 1.69804 1.26950 1.24501 1.33738 0.85608 0.80407 0.76399 0.79189 1.20778 1.23360 1.19126 0.91583 0.93171 0.95002 0.92592 0.87379 0.89824 0.85130 0.87762 0.93470 0.94659 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 8.90 71.98 0.64 -4.34 16 2 C -0.12 -3.23 5.55 30.59 0.17 -3.06 16 3 C 0.11 3.59 3.13 45.44 0.14 3.73 16 4 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 5 C -0.11 -2.80 6.22 31.65 0.20 -2.60 16 6 C -0.12 -3.88 3.53 -10.80 -0.04 -3.92 16 7 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 8 C -0.13 -3.79 9.07 71.98 0.65 -3.13 16 9 C 0.43 20.89 5.69 87.90 0.50 21.39 16 10 O -0.60 -35.27 13.12 -3.07 -0.04 -35.31 16 11 N -0.47 -22.66 2.26 -609.74 -1.38 -24.03 16 12 C -0.33 -18.86 9.30 84.04 0.78 -18.07 16 13 H 0.10 5.56 5.58 -2.91 -0.02 5.54 16 14 C 0.03 1.78 5.18 84.93 0.44 2.22 16 15 N -0.91 -58.38 13.96 21.66 0.30 -58.08 16 16 Si 0.95 52.95 24.67 68.60 1.69 54.64 16 17 H -0.28 -16.85 6.20 99.48 0.62 -16.23 16 18 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 19 H -0.27 -13.82 7.10 99.48 0.71 -13.12 16 20 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 21 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 22 H 0.03 1.32 5.67 -2.39 -0.01 1.31 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 25 H 0.08 2.02 7.91 -2.39 -0.02 2.00 16 26 H 0.13 2.08 7.89 -2.39 -0.02 2.06 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.27 16.55 8.31 -92.71 -0.77 15.78 16 Total: -1.00 -76.27 239.61 5.08 -71.19 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: 1.02 Total: -0.62 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 3.49 Total: -7.80 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.08 Total: -82.11 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.04 Total: -35.31 kcal Atomic # 14 Polarization: 52.95 SS G_CDS: 1.69 Total: 54.64 kcal Total: -76.27 5.08 -71.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714409.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.868 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds