Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.28847 * 2 1 4 4 C 1.54476 * 110.24614 * 238.02874 * 2 1 3 5 5 H 1.08997 * 110.97040 * 24.53368 * 4 2 1 6 6 C 1.53001 * 110.97140 * 148.29937 * 4 2 1 7 7 C 1.54627 * 101.76424 * 266.41505 * 4 2 1 8 8 C 1.51285 * 104.19738 * 335.19969 * 7 4 2 9 9 O 1.21276 * 124.94475 * 196.20555 * 8 7 4 10 10 N 1.34424 * 110.10841 * 16.25598 * 8 7 4 11 11 C 1.46509 * 124.34231 * 180.40836 * 10 8 7 12 12 C 1.50696 * 109.46824 * 269.99335 * 11 10 8 13 13 H 1.08004 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00007 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00352 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99880 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47284 * 90.00115 * 16 14 12 18 18 H 1.48504 * 109.47124 * 210.00236 * 16 14 12 19 19 H 1.48505 * 109.47059 * 330.00301 * 16 14 12 20 20 H 1.09001 * 109.46940 * 181.97465 * 1 2 3 21 21 H 1.08999 * 109.46738 * 301.97360 * 1 2 3 22 22 H 1.08997 * 109.46776 * 61.97253 * 1 2 3 23 23 H 1.08999 * 109.47059 * 173.83513 * 6 4 2 24 24 H 1.09002 * 109.46690 * 293.83066 * 6 4 2 25 25 H 1.08993 * 109.47142 * 53.82708 * 6 4 2 26 26 H 1.09001 * 110.48777 * 93.88219 * 7 4 2 27 27 H 1.09000 * 110.48903 * 216.52672 * 7 4 2 28 28 H 1.08998 * 109.47149 * 29.99547 * 11 10 8 29 29 H 1.09006 * 109.46595 * 149.99761 * 11 10 8 30 30 H 0.96997 * 120.00254 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0646 -0.7674 -1.2295 5 1 1.3309 -0.7723 -2.0355 6 6 3.3945 -0.1799 -1.7060 7 6 2.2625 -2.1883 -0.6526 8 6 2.4509 -1.9634 0.8315 9 8 2.9072 -2.7782 1.6052 10 7 2.0379 -0.7292 1.1679 11 6 2.0884 -0.1824 2.5262 12 6 0.8017 -0.4998 3.2436 13 1 0.0242 -1.0538 2.7385 14 6 0.6169 -0.0830 4.5448 15 7 -0.5058 -0.3604 5.1710 16 14 1.9618 0.8747 5.4186 17 1 1.7647 2.3282 5.1873 18 1 1.9033 0.5929 6.8755 19 1 3.2866 0.4641 4.8878 20 1 -0.3633 -1.0271 0.0354 21 1 -0.3633 0.5442 0.8718 22 1 -0.3633 0.4829 -0.9071 23 1 3.8030 -0.8033 -2.5013 24 1 3.2312 0.8297 -2.0833 25 1 4.0966 -0.1472 -0.8729 26 1 1.3800 -2.8011 -0.8366 27 1 3.1485 -2.6549 -1.0832 28 1 2.9245 -0.6268 3.0660 29 1 2.2203 0.8986 2.4779 30 1 -0.6359 -0.0668 6.0863 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687798779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -45.128048 kcal Electronic energy + Delta-G solvation = -12972.515573 eV Core-core repulsion = 10767.376184 eV Total energy + Delta-G solvation = -2205.139389 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.96925 -36.20704 -33.72692 -32.03602 -29.84357 -28.73262 -26.84587 -23.14182 -22.37364 -20.30385 -18.57118 -16.89934 -15.85809 -15.30803 -14.81850 -14.17139 -13.56496 -13.39389 -13.01369 -12.79948 -12.48116 -12.33185 -11.93764 -11.74177 -11.34941 -11.20295 -10.85216 -10.65198 -10.54879 -10.26022 -10.10636 -9.49049 -8.96138 -8.60251 -7.70697 -6.09745 -4.08639 3.25754 3.34215 3.37763 3.39494 3.96471 4.38354 4.65218 4.77151 4.98211 5.21503 5.31820 5.56112 5.61350 5.79912 5.81971 5.94133 5.96566 6.04538 6.19553 6.32256 6.41482 6.64615 6.83042 6.89406 7.45476 7.59422 8.13009 8.46137 8.93605 9.05658 9.50678 11.03407 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044668 B = 0.011306 C = 0.010953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.689494 B = 2475.980953 C = 2555.727804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.079 0.921 4 C -0.103 4.103 5 H 0.092 0.908 6 C -0.142 4.142 7 C -0.152 4.152 8 C 0.510 3.490 9 O -0.544 6.544 10 N -0.590 5.590 11 C 0.225 3.775 12 C -0.529 4.529 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.874 3.126 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.264 1.264 20 H 0.055 0.945 21 H 0.076 0.924 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 2.893 -13.428 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 H 0.097 0.903 4 C -0.122 4.122 5 H 0.110 0.890 6 C -0.200 4.200 7 C -0.192 4.192 8 C 0.297 3.703 9 O -0.422 6.422 10 N -0.322 5.322 11 C 0.105 3.895 12 C -0.568 4.568 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.189 1.189 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.776 2.540 -12.743 13.844 hybrid contribution 0.414 0.542 0.651 0.943 sum 5.191 3.082 -12.091 13.515 Atomic orbital electron populations 1.22145 0.94593 1.02664 1.02159 1.21595 0.94753 0.96014 0.84596 0.90313 1.22224 0.98268 0.94493 0.97240 0.89015 1.21790 0.96423 1.00639 1.01112 1.22431 1.04066 0.97833 0.94909 1.20626 0.77721 0.82045 0.89913 1.90661 1.46842 1.47354 1.57346 1.48357 1.60095 1.14594 1.09162 1.19577 0.98620 0.93521 0.77761 1.21375 1.00796 1.36506 0.98091 0.90432 1.24868 0.95444 0.95736 0.97006 1.69891 1.24837 1.46415 1.12332 0.86881 0.83128 0.80444 0.79503 1.20062 1.20904 1.18905 0.92600 0.90508 0.92718 0.92361 0.92239 0.92436 0.88528 0.88973 0.94463 0.95602 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.34 37.16 0.35 -2.17 16 2 C 0.14 2.17 3.26 -67.02 -0.22 1.95 16 3 H 0.08 1.17 7.91 -51.93 -0.41 0.76 16 4 C -0.10 -1.30 3.27 -88.99 -0.29 -1.59 16 5 H 0.09 0.94 7.89 -51.93 -0.41 0.53 16 6 C -0.14 -1.54 9.12 37.16 0.34 -1.20 16 7 C -0.15 -2.28 6.41 -26.74 -0.17 -2.45 16 8 C 0.51 10.94 8.02 -10.86 -0.09 10.85 16 9 O -0.54 -14.14 17.60 5.56 0.10 -14.04 16 10 N -0.59 -12.53 2.56 -166.25 -0.42 -12.96 16 11 C 0.23 5.58 4.75 -5.19 -0.02 5.56 16 12 C -0.53 -15.20 9.57 -34.44 -0.33 -15.53 16 13 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 16 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 20 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.08 1.45 7.88 -51.93 -0.41 1.04 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.09 1.22 7.91 -51.93 -0.41 0.81 16 28 H 0.04 0.99 6.99 -51.93 -0.36 0.63 16 29 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 252.90 15.07 3.81 3.81 Total: -1.00 -33.46 252.90 -5.47 -38.92 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.52 Total: -3.15 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.53 Total: -2.58 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.35 Total: -39.81 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.10 Total: -14.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.46 -5.47 -38.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687798779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.205 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds