Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.28847 * 2 1 4 4 C 1.54476 * 110.24614 * 238.02874 * 2 1 3 5 5 H 1.08997 * 110.97040 * 24.53368 * 4 2 1 6 6 C 1.53001 * 110.97140 * 148.29937 * 4 2 1 7 7 C 1.54627 * 101.76424 * 266.41505 * 4 2 1 8 8 C 1.51285 * 104.19738 * 335.19969 * 7 4 2 9 9 O 1.21276 * 124.94475 * 196.20555 * 8 7 4 10 10 N 1.34424 * 110.10841 * 16.25598 * 8 7 4 11 11 C 1.46509 * 124.34231 * 180.40836 * 10 8 7 12 12 C 1.50696 * 109.46824 * 269.99335 * 11 10 8 13 13 H 1.08004 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00007 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00352 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99880 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47284 * 90.00115 * 16 14 12 18 18 H 1.48504 * 109.47124 * 210.00236 * 16 14 12 19 19 H 1.48505 * 109.47059 * 330.00301 * 16 14 12 20 20 H 1.09001 * 109.46940 * 181.97465 * 1 2 3 21 21 H 1.08999 * 109.46738 * 301.97360 * 1 2 3 22 22 H 1.08997 * 109.46776 * 61.97253 * 1 2 3 23 23 H 1.08999 * 109.47059 * 173.83513 * 6 4 2 24 24 H 1.09002 * 109.46690 * 293.83066 * 6 4 2 25 25 H 1.08993 * 109.47142 * 53.82708 * 6 4 2 26 26 H 1.09001 * 110.48777 * 93.88219 * 7 4 2 27 27 H 1.09000 * 110.48903 * 216.52672 * 7 4 2 28 28 H 1.08998 * 109.47149 * 29.99547 * 11 10 8 29 29 H 1.09006 * 109.46595 * 149.99761 * 11 10 8 30 30 H 0.96997 * 120.00254 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0646 -0.7674 -1.2295 5 1 1.3309 -0.7723 -2.0355 6 6 3.3945 -0.1799 -1.7060 7 6 2.2625 -2.1883 -0.6526 8 6 2.4509 -1.9634 0.8315 9 8 2.9072 -2.7782 1.6052 10 7 2.0379 -0.7292 1.1679 11 6 2.0884 -0.1824 2.5262 12 6 0.8017 -0.4998 3.2436 13 1 0.0242 -1.0538 2.7385 14 6 0.6169 -0.0830 4.5448 15 7 -0.5058 -0.3604 5.1710 16 14 1.9618 0.8747 5.4186 17 1 1.7647 2.3282 5.1873 18 1 1.9033 0.5929 6.8755 19 1 3.2866 0.4641 4.8878 20 1 -0.3633 -1.0271 0.0354 21 1 -0.3633 0.5442 0.8718 22 1 -0.3633 0.4829 -0.9071 23 1 3.8030 -0.8033 -2.5013 24 1 3.2312 0.8297 -2.0833 25 1 4.0966 -0.1472 -0.8729 26 1 1.3800 -2.8011 -0.8366 27 1 3.1485 -2.6549 -1.0832 28 1 2.9245 -0.6268 3.0660 29 1 2.2203 0.8986 2.4779 30 1 -0.6359 -0.0668 6.0863 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687798779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -68.631106 kcal Electronic energy + Delta-G solvation = -12973.534742 eV Core-core repulsion = 10767.376184 eV Total energy + Delta-G solvation = -2206.158558 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.46511 -37.84684 -35.58212 -33.91279 -31.20660 -30.33791 -28.36814 -24.47030 -24.28705 -21.52919 -20.21111 -19.11421 -17.54016 -16.75074 -16.36670 -16.08203 -15.01285 -14.74684 -14.51564 -14.38150 -14.19079 -13.75777 -13.42819 -13.31907 -12.80623 -12.62890 -12.42403 -12.13869 -12.02508 -11.82347 -11.61871 -11.43531 -10.85133 -10.64135 -9.46633 -8.35956 -6.41325 1.29598 1.34219 1.44551 1.74108 2.28767 2.38424 2.96961 3.49046 3.54831 3.95546 4.15347 4.42432 4.55259 4.61866 4.65483 4.75461 4.87223 4.89835 4.95833 5.04652 5.12139 5.23156 5.40357 5.44177 5.53005 5.74284 6.23180 6.51467 6.60646 7.18166 7.39926 8.80748 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044668 B = 0.011306 C = 0.010953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.689494 B = 2475.980953 C = 2555.727804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.123 3.877 3 H 0.096 0.904 4 C -0.084 4.084 5 H 0.131 0.869 6 C -0.140 4.140 7 C -0.140 4.140 8 C 0.489 3.511 9 O -0.605 6.605 10 N -0.600 5.600 11 C 0.231 3.769 12 C -0.535 4.535 13 H 0.032 0.968 14 C 0.011 3.989 15 N -0.944 5.944 16 Si 0.947 3.053 17 H -0.250 1.250 18 H -0.281 1.281 19 H -0.257 1.257 20 H 0.038 0.962 21 H 0.036 0.964 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.034 0.966 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.015 0.985 29 H 0.049 0.951 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 4.425 -15.807 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.020 3.980 3 H 0.114 0.886 4 C -0.102 4.102 5 H 0.149 0.851 6 C -0.197 4.197 7 C -0.180 4.180 8 C 0.279 3.721 9 O -0.488 6.488 10 N -0.331 5.331 11 C 0.110 3.890 12 C -0.574 4.574 13 H 0.051 0.949 14 C -0.187 4.187 15 N -0.584 5.584 16 Si 0.770 3.230 17 H -0.174 1.174 18 H -0.206 1.206 19 H -0.181 1.181 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.119 0.881 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.939 4.101 -15.181 16.809 hybrid contribution -0.042 0.019 1.358 1.359 sum 5.897 4.120 -13.823 15.583 Atomic orbital electron populations 1.22088 0.94787 1.01467 1.02578 1.22041 0.94622 0.97057 0.84241 0.88566 1.22290 1.00197 0.91569 0.96191 0.85108 1.21814 0.94673 1.02322 1.00938 1.22472 1.05697 1.00171 0.89673 1.21886 0.76331 0.81266 0.92640 1.90607 1.49398 1.49032 1.59737 1.48540 1.59937 1.15412 1.09191 1.19254 0.95431 0.94619 0.79745 1.21550 1.01362 1.35847 0.98633 0.94928 1.25861 0.98114 0.96936 0.97836 1.70045 1.27266 1.48083 1.12975 0.85719 0.79617 0.79870 0.77814 1.17405 1.20644 1.18127 0.94274 0.94522 0.88085 0.90041 0.90119 0.94712 0.87182 0.86667 0.96652 0.93297 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.34 71.98 0.67 -3.96 16 2 C 0.12 3.68 3.26 45.45 0.15 3.83 16 3 H 0.10 2.56 7.91 -2.39 -0.02 2.54 16 4 C -0.08 -1.75 3.27 -9.74 -0.03 -1.78 16 5 H 0.13 1.84 7.89 -2.39 -0.02 1.82 16 6 C -0.14 -2.38 9.12 71.98 0.66 -1.72 16 7 C -0.14 -3.84 6.41 30.59 0.20 -3.65 16 8 C 0.49 21.08 8.02 87.90 0.71 21.78 16 9 O -0.60 -32.59 17.60 -3.02 -0.05 -32.64 16 10 N -0.60 -25.47 2.56 -798.47 -2.04 -27.51 16 11 C 0.23 11.62 4.75 85.63 0.41 12.02 16 12 C -0.54 -31.97 9.57 25.60 0.24 -31.73 16 13 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 14 C 0.01 0.63 5.47 84.65 0.46 1.10 16 15 N -0.94 -60.10 13.96 21.45 0.30 -59.80 16 16 Si 0.95 44.76 27.47 68.60 1.88 46.65 16 17 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 20 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.04 1.40 7.88 -2.39 -0.02 1.38 16 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.12 2.66 7.91 -2.39 -0.02 2.64 16 28 H 0.02 0.84 6.99 -2.39 -0.02 0.82 16 29 H 0.05 2.22 7.57 -2.38 -0.02 2.20 16 30 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -77.97 252.90 4.59 -73.38 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.04 Total: 4.03 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 3.46 Total: -4.10 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.74 Total: -87.32 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Total: -77.97 4.59 -73.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687798779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.748 kcal (2) G-P(sol) polarization free energy of solvation -77.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds