Wall clock time and date at job start Mon Mar 30 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.85294 * 2 1 4 4 C 1.54625 * 110.97418 * 236.16533 * 2 1 3 5 5 C 1.51289 * 104.25608 * 266.46177 * 4 2 1 6 6 O 1.21278 * 124.94483 * 164.00904 * 5 4 2 7 7 N 1.34413 * 110.11057 * 344.14196 * 5 4 2 8 8 C 1.46506 * 124.34853 * 179.43995 * 7 5 4 9 9 C 1.50699 * 109.46928 * 269.70089 * 8 7 5 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00621 * 13 11 9 15 15 H 1.48500 * 109.47411 * 210.00442 * 13 11 9 16 16 H 1.48494 * 109.47378 * 330.00637 * 13 11 9 17 17 C 1.46765 * 111.30426 * 359.17356 * 7 5 4 18 18 H 1.08994 * 110.24801 * 136.28341 * 17 7 5 19 19 C 1.53001 * 110.24625 * 258.28023 * 17 7 5 20 20 H 1.09001 * 109.47815 * 296.21469 * 1 2 3 21 21 H 1.09003 * 109.47403 * 56.21725 * 1 2 3 22 22 H 1.09004 * 109.47008 * 176.21383 * 1 2 3 23 23 H 1.09002 * 110.48493 * 25.35726 * 4 2 1 24 24 H 1.08995 * 110.48832 * 147.99937 * 4 2 1 25 25 H 1.09004 * 109.47073 * 29.69917 * 8 7 5 26 26 H 1.09000 * 109.47212 * 149.69999 * 8 7 5 27 27 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 28 28 H 1.09001 * 109.46713 * 58.54325 * 19 17 7 29 29 H 1.08997 * 109.47023 * 178.54471 * 19 17 7 30 30 H 1.09000 * 109.47228 * 298.55079 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0834 -0.8039 -1.1993 5 6 2.3013 -2.1952 -0.6465 6 8 2.4641 -3.1919 -1.3180 7 7 2.2853 -2.1664 0.6973 8 6 2.4545 -3.3445 1.5515 9 6 1.1068 -3.9549 1.8381 10 1 0.2136 -3.5099 1.4250 11 6 1.0142 -5.0819 2.6269 12 7 2.1018 -5.6240 3.1296 13 14 -0.6565 -5.8380 2.9829 14 1 -0.9765 -6.8450 1.9394 15 1 -0.6286 -6.4961 4.3138 16 1 -1.6925 -4.7742 2.9784 17 6 2.0828 -0.8021 1.1989 18 1 1.3617 -0.8038 2.0163 19 6 3.4126 -0.2069 1.6661 20 1 -0.3635 0.4539 0.9219 21 1 -0.3634 0.5714 -0.8542 22 1 -0.3633 -1.0255 -0.0679 23 1 1.3584 -0.8229 -2.0130 24 1 3.0285 -0.3803 -1.5390 25 1 3.0834 -4.0751 1.0425 26 1 2.9264 -3.0492 2.4886 27 1 2.0366 -6.4166 3.6848 28 1 4.1202 -0.2031 0.8370 29 1 3.2522 0.8143 2.0117 30 1 3.8129 -0.8081 2.4825 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687798780.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:42 Heat of formation + Delta-G solvation = -50.415256 kcal Electronic energy + Delta-G solvation = -12937.485408 eV Core-core repulsion = 10732.116748 eV Total energy + Delta-G solvation = -2205.368660 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.86519 -36.11906 -33.64942 -31.98423 -29.89696 -28.39006 -26.37755 -23.29007 -22.68617 -20.20228 -18.48118 -16.47168 -15.78276 -15.19222 -14.72028 -14.37904 -13.61815 -13.18461 -13.11267 -12.68320 -12.42268 -12.11815 -11.84671 -11.56667 -11.22355 -11.04550 -10.83341 -10.63955 -10.57906 -10.28578 -10.09335 -9.64564 -8.85166 -8.44541 -7.64028 -6.05889 -4.11219 3.30641 3.36283 3.38116 3.48752 4.09769 4.44954 4.72135 4.84823 5.05686 5.27492 5.39532 5.62202 5.65068 5.78137 5.84721 5.93908 6.02172 6.13282 6.22804 6.29376 6.44355 6.58935 7.04389 7.37536 7.62864 7.91780 8.21441 8.31850 8.88740 9.17033 9.55060 11.01930 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038769 B = 0.011150 C = 0.010906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.051269 B = 2510.713176 C = 2566.716474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.088 0.912 4 C -0.153 4.153 5 C 0.507 3.493 6 O -0.547 6.547 7 N -0.592 5.592 8 C 0.255 3.745 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.130 3.870 18 H 0.086 0.914 19 C -0.159 4.159 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 12.772 -2.832 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.194 4.194 5 C 0.293 3.707 6 O -0.425 6.425 7 N -0.324 5.324 8 C 0.136 3.864 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.727 3.273 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.199 1.199 17 C 0.025 3.975 18 H 0.104 0.896 19 C -0.217 4.217 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.669 12.012 -2.983 12.395 hybrid contribution -0.863 -0.500 0.350 1.057 sum -1.532 11.512 -2.634 11.908 Atomic orbital electron populations 1.21785 0.94055 1.02690 1.01511 1.22171 0.96471 0.98892 0.94364 0.89344 1.22442 1.02776 0.95309 0.98868 1.20626 0.76880 0.89962 0.83186 1.90655 1.51456 1.37473 1.62954 1.48669 1.69139 1.08188 1.06412 1.19193 0.97321 0.80965 0.88894 1.21462 0.93098 1.11459 1.30692 0.92326 1.24947 0.96990 0.96537 0.95655 1.69930 1.27587 1.21844 1.34041 0.86480 0.83872 0.79427 0.77554 1.20521 1.21109 1.19877 1.21601 0.96785 0.82580 0.96564 0.89569 1.22149 0.97456 1.00362 1.01729 0.92226 0.92613 0.91964 0.88975 0.88969 0.94197 0.94845 0.92666 0.92771 0.92035 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.12 37.16 0.34 -1.51 16 2 C -0.10 -1.34 3.27 -88.99 -0.29 -1.63 16 3 H 0.09 0.92 7.89 -51.93 -0.41 0.51 16 4 C -0.15 -2.36 6.41 -26.74 -0.17 -2.53 16 5 C 0.51 11.16 8.02 -10.86 -0.09 11.07 16 6 O -0.55 -14.56 17.59 5.56 0.10 -14.47 16 7 N -0.59 -13.01 2.56 -166.24 -0.42 -13.44 16 8 C 0.25 6.79 5.69 -5.19 -0.03 6.76 16 9 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 10 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 13 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 C 0.13 2.15 3.26 -67.01 -0.22 1.93 16 18 H 0.09 1.48 7.91 -51.93 -0.41 1.07 16 19 C -0.16 -2.22 9.46 37.16 0.35 -1.87 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.09 1.32 7.91 -51.93 -0.41 0.91 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.04 1.19 7.92 -51.93 -0.41 0.78 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 257.24 15.07 3.88 3.88 Total: -1.00 -32.83 257.24 -5.83 -38.66 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.57 Total: -3.99 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.53 Total: -1.62 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.31 Total: -39.43 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.10 Total: -14.47 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.83 -5.83 -38.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687798780.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.757 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds