Wall clock time and date at job start Mon Mar 30 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.85472 * 2 1 4 4 C 1.54629 * 111.00457 * 123.81074 * 2 1 3 5 5 C 1.51286 * 104.25827 * 142.71464 * 4 2 1 6 6 O 1.21274 * 124.95012 * 164.01332 * 5 4 2 7 7 N 1.34424 * 110.11348 * 344.14472 * 5 4 2 8 8 C 1.46495 * 124.35140 * 179.43250 * 7 5 4 9 9 C 1.50703 * 109.47395 * 269.70605 * 8 7 5 10 10 H 1.07994 * 119.99603 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99838 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00380 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99848 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99776 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99769 * 13 11 9 17 17 C 1.46768 * 111.29993 * 359.17720 * 7 5 4 18 18 H 1.09002 * 110.24908 * 136.27761 * 17 7 5 19 19 C 1.53006 * 110.24095 * 258.27878 * 17 7 5 20 20 H 1.08996 * 109.46814 * 183.78837 * 1 2 3 21 21 H 1.08996 * 109.47139 * 303.78902 * 1 2 3 22 22 H 1.09003 * 109.47198 * 63.79185 * 1 2 3 23 23 H 1.08995 * 110.49034 * 261.61387 * 4 2 1 24 24 H 1.09000 * 110.48059 * 24.12435 * 4 2 1 25 25 H 1.09005 * 109.47411 * 149.70540 * 8 7 5 26 26 H 1.08998 * 109.46900 * 29.70619 * 8 7 5 27 27 H 0.97001 * 119.99667 * 0.02562 * 12 11 9 28 28 H 1.09001 * 109.47232 * 58.54442 * 19 17 7 29 29 H 1.08999 * 109.46797 * 178.54721 * 19 17 7 30 30 H 1.08994 * 109.46942 * 298.54268 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0842 -0.8033 1.1994 5 6 3.3069 -1.5022 0.6467 6 8 4.1803 -2.0090 1.3182 7 7 3.2857 -1.4771 -0.6971 8 6 4.3265 -2.0545 -1.5511 9 6 5.3766 -1.0123 -1.8378 10 1 5.2783 -0.0191 -1.4254 11 6 6.4623 -1.3267 -2.6274 12 7 6.5818 -2.5361 -3.1300 13 14 7.7644 -0.0351 -2.9821 14 1 7.3995 1.2349 -2.3043 15 1 7.8492 0.1929 -4.4471 16 1 9.0792 -0.5060 -2.4775 17 6 2.0829 -0.8021 -1.1989 18 1 2.3413 -0.1289 -2.0163 19 6 1.0533 -1.8331 -1.6661 20 1 -0.3633 -1.0254 0.0679 21 1 -0.3633 0.5715 0.8540 22 1 -0.3634 0.4539 -0.9220 23 1 2.3600 -0.1325 2.0131 24 1 1.3509 -1.5340 1.5406 25 1 3.8826 -2.3904 -2.4883 26 1 4.7853 -2.9021 -1.0421 27 1 5.9059 -3.2069 -2.9454 28 1 0.7978 -2.4929 -0.8369 29 1 0.1562 -1.3197 -2.0117 30 1 1.4727 -2.4211 -2.4824 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687798781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:44 Heat of formation + Delta-G solvation = -51.046200 kcal Electronic energy + Delta-G solvation = -12906.894064 eV Core-core repulsion = 10701.498045 eV Total energy + Delta-G solvation = -2205.396020 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98189 -36.34884 -34.04528 -32.13973 -29.97107 -28.10976 -25.73096 -24.11612 -22.77376 -19.80514 -18.64788 -16.89326 -16.30073 -15.28932 -14.66267 -14.24989 -13.75808 -13.66477 -12.97115 -12.59623 -12.44825 -12.26145 -11.82732 -11.66485 -11.44170 -11.35005 -10.80381 -10.61740 -10.53276 -10.32496 -10.14028 -9.15407 -8.95526 -8.40555 -7.64534 -6.41415 -4.14040 3.36367 3.42809 3.47395 3.60459 3.97170 4.51843 4.64511 4.78032 4.91619 5.27526 5.34318 5.47858 5.55103 5.68433 5.76060 5.80483 5.84798 6.00234 6.12131 6.23170 6.24161 6.50786 6.78255 7.03248 7.48761 8.00305 8.15969 8.41093 8.75174 9.06073 9.56394 10.95719 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044969 B = 0.010306 C = 0.009948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.497891 B = 2716.277036 C = 2813.922200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.087 0.913 4 C -0.151 4.151 5 C 0.507 3.493 6 O -0.545 6.545 7 N -0.591 5.591 8 C 0.245 3.755 9 C -0.609 4.609 10 H 0.053 0.947 11 C 0.019 3.981 12 N -0.910 5.910 13 Si 1.078 2.922 14 H -0.290 1.290 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.131 3.869 18 H 0.085 0.915 19 C -0.159 4.159 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.023 0.977 26 H 0.030 0.970 27 H 0.268 0.732 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 5.090 3.218 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.105 0.895 4 C -0.192 4.192 5 C 0.294 3.706 6 O -0.424 6.424 7 N -0.322 5.322 8 C 0.126 3.874 9 C -0.648 4.648 10 H 0.072 0.928 11 C -0.185 4.185 12 N -0.546 5.546 13 Si 0.906 3.094 14 H -0.216 1.216 15 H -0.212 1.212 16 H -0.211 1.211 17 C 0.026 3.974 18 H 0.103 0.897 19 C -0.217 4.217 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.015 5.040 2.694 12.409 hybrid contribution -1.420 -0.242 0.733 1.617 sum -12.435 4.798 3.427 13.762 Atomic orbital electron populations 1.21826 0.93843 1.02197 1.01776 1.22159 0.96210 0.99434 0.94262 0.89499 1.22426 0.97590 1.00300 0.98846 1.20660 0.86835 0.80084 0.83061 1.90656 1.40731 1.48085 1.62919 1.48484 1.21448 1.55896 1.06360 1.19249 0.85014 0.94580 0.88596 1.22338 1.08708 0.98908 1.34829 0.92829 1.25852 0.99022 1.00184 0.93449 1.70749 1.37006 1.03400 1.43423 0.83416 0.75490 0.74235 0.76231 1.21550 1.21241 1.21150 1.21545 0.85379 0.93798 0.96661 0.89674 1.22214 0.98640 0.99355 1.01486 0.92004 0.92526 0.92129 0.88968 0.88789 0.95882 0.95209 0.92183 0.92674 0.91553 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.98 37.16 0.30 -1.06 16 2 C -0.10 -1.37 3.66 -88.99 -0.33 -1.69 16 3 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 4 C -0.15 -2.33 6.42 -26.74 -0.17 -2.50 16 5 C 0.51 11.28 8.02 -10.86 -0.09 11.19 16 6 O -0.55 -14.63 17.58 5.56 0.10 -14.53 16 7 N -0.59 -13.15 2.56 -166.24 -0.42 -13.58 16 8 C 0.24 6.54 5.00 -5.19 -0.03 6.51 16 9 C -0.61 -17.82 9.39 -34.44 -0.32 -18.14 16 10 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 12 N -0.91 -27.99 13.65 55.43 0.76 -27.23 16 13 Si 1.08 25.99 29.90 -169.99 -5.08 20.90 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.13 2.20 3.62 -67.00 -0.24 1.95 16 18 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 19 C -0.16 -2.21 8.28 37.16 0.31 -1.91 16 20 H 0.06 0.58 6.60 -51.93 -0.34 0.24 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 23 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.09 1.25 7.84 -51.93 -0.41 0.85 16 25 H 0.02 0.61 8.01 -51.93 -0.42 0.19 16 26 H 0.03 0.88 7.78 -51.93 -0.40 0.48 16 27 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 28 H 0.05 0.75 7.64 -51.93 -0.40 0.35 16 29 H 0.07 0.72 6.89 -51.93 -0.36 0.37 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 251.13 15.07 3.78 3.78 Total: -1.00 -33.99 251.13 -5.88 -39.87 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -4.34 Total: -4.02 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.67 Total: -5.19 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.33 Total: -40.81 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.10 Total: -14.53 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.90 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.99 -5.88 -39.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687798781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.179 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds