Wall clock time and date at job start Mon Mar 30 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.85472 * 2 1 4 4 C 1.54629 * 111.00457 * 123.81074 * 2 1 3 5 5 C 1.51286 * 104.25827 * 142.71464 * 4 2 1 6 6 O 1.21274 * 124.95012 * 164.01332 * 5 4 2 7 7 N 1.34424 * 110.11348 * 344.14472 * 5 4 2 8 8 C 1.46495 * 124.35140 * 179.43250 * 7 5 4 9 9 C 1.50703 * 109.47395 * 269.70605 * 8 7 5 10 10 H 1.07994 * 119.99603 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99838 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00380 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99848 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99776 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99769 * 13 11 9 17 17 C 1.46768 * 111.29993 * 359.17720 * 7 5 4 18 18 H 1.09002 * 110.24908 * 136.27761 * 17 7 5 19 19 C 1.53006 * 110.24095 * 258.27878 * 17 7 5 20 20 H 1.08996 * 109.46814 * 183.78837 * 1 2 3 21 21 H 1.08996 * 109.47139 * 303.78902 * 1 2 3 22 22 H 1.09003 * 109.47198 * 63.79185 * 1 2 3 23 23 H 1.08995 * 110.49034 * 261.61387 * 4 2 1 24 24 H 1.09000 * 110.48059 * 24.12435 * 4 2 1 25 25 H 1.09005 * 109.47411 * 149.70540 * 8 7 5 26 26 H 1.08998 * 109.46900 * 29.70619 * 8 7 5 27 27 H 0.97001 * 119.99667 * 0.02562 * 12 11 9 28 28 H 1.09001 * 109.47232 * 58.54442 * 19 17 7 29 29 H 1.08999 * 109.46797 * 178.54721 * 19 17 7 30 30 H 1.08994 * 109.46942 * 298.54268 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0842 -0.8033 1.1994 5 6 3.3069 -1.5022 0.6467 6 8 4.1803 -2.0090 1.3182 7 7 3.2857 -1.4771 -0.6971 8 6 4.3265 -2.0545 -1.5511 9 6 5.3766 -1.0123 -1.8378 10 1 5.2783 -0.0191 -1.4254 11 6 6.4623 -1.3267 -2.6274 12 7 6.5818 -2.5361 -3.1300 13 14 7.7644 -0.0351 -2.9821 14 1 7.3995 1.2349 -2.3043 15 1 7.8492 0.1929 -4.4471 16 1 9.0792 -0.5060 -2.4775 17 6 2.0829 -0.8021 -1.1989 18 1 2.3413 -0.1289 -2.0163 19 6 1.0533 -1.8331 -1.6661 20 1 -0.3633 -1.0254 0.0679 21 1 -0.3633 0.5715 0.8540 22 1 -0.3634 0.4539 -0.9220 23 1 2.3600 -0.1325 2.0131 24 1 1.3509 -1.5340 1.5406 25 1 3.8826 -2.3904 -2.4883 26 1 4.7853 -2.9021 -1.0421 27 1 5.9059 -3.2069 -2.9454 28 1 0.7978 -2.4929 -0.8369 29 1 0.1562 -1.3197 -2.0117 30 1 1.4727 -2.4211 -2.4824 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687798781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:44 Heat of formation + Delta-G solvation = -74.259503 kcal Electronic energy + Delta-G solvation = -12907.900669 eV Core-core repulsion = 10701.498045 eV Total energy + Delta-G solvation = -2206.402624 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.54243 -38.02345 -36.05526 -33.93898 -31.29053 -29.67834 -27.39188 -25.45968 -24.80450 -21.16633 -20.29639 -19.02708 -17.86498 -16.82868 -16.34121 -15.78537 -15.69359 -15.13790 -14.62892 -14.05079 -13.90401 -13.66376 -13.52452 -13.19363 -12.86324 -12.54451 -12.46433 -12.37309 -11.98999 -11.71924 -11.51787 -11.22076 -10.74564 -10.63725 -9.56560 -8.77025 -6.54211 1.46023 1.56635 1.64808 1.73585 2.28810 2.49527 3.02227 3.41927 3.48323 3.85994 4.10024 4.33150 4.48314 4.55944 4.56645 4.69947 4.79971 4.86013 4.87915 4.92383 5.10347 5.22817 5.27154 5.52652 5.62676 5.73574 6.07688 6.36633 6.45595 7.19272 7.33978 8.57436 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044969 B = 0.010306 C = 0.009948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.497891 B = 2716.277036 C = 2813.922200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.485 3.515 6 O -0.607 6.607 7 N -0.601 5.601 8 C 0.255 3.745 9 C -0.624 4.624 10 H 0.045 0.955 11 C -0.031 4.031 12 N -0.928 5.928 13 Si 1.126 2.874 14 H -0.274 1.274 15 H -0.266 1.266 16 H -0.280 1.280 17 C 0.117 3.883 18 H 0.074 0.926 19 C -0.151 4.151 20 H 0.069 0.931 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.123 0.877 25 H 0.021 0.979 26 H -0.012 1.012 27 H 0.256 0.744 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 7.023 3.374 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 H 0.110 0.890 4 C -0.174 4.174 5 C 0.275 3.725 6 O -0.490 6.490 7 N -0.331 5.331 8 C 0.133 3.867 9 C -0.662 4.662 10 H 0.063 0.937 11 C -0.229 4.229 12 N -0.565 5.565 13 Si 0.946 3.054 14 H -0.199 1.199 15 H -0.191 1.191 16 H -0.206 1.206 17 C 0.015 3.985 18 H 0.092 0.908 19 C -0.209 4.209 20 H 0.088 0.912 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.128 0.872 24 H 0.141 0.859 25 H 0.039 0.961 26 H 0.006 0.994 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.097 6.986 2.838 15.112 hybrid contribution -0.822 -0.879 0.685 1.385 sum -13.919 6.106 3.523 15.603 Atomic orbital electron populations 1.21827 0.90089 1.03393 1.03678 1.22208 0.98989 0.98465 0.90883 0.89042 1.22450 0.94476 1.00722 0.99779 1.21993 0.88223 0.79458 0.82832 1.90603 1.43588 1.50660 1.64134 1.48632 1.22133 1.55812 1.06557 1.18772 0.86105 0.93119 0.88680 1.22599 1.09794 0.98903 1.34881 0.93676 1.27471 1.01268 1.01348 0.92828 1.70872 1.36961 1.04053 1.44580 0.82831 0.72920 0.72214 0.77399 1.19927 1.19143 1.20562 1.21984 0.83967 0.94570 0.98026 0.90758 1.22179 0.99033 0.98738 1.00909 0.91211 0.90335 0.90570 0.87200 0.85866 0.96129 0.99410 0.93506 0.92018 0.87483 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.98 71.98 0.57 -1.31 16 2 C -0.09 -2.03 3.66 -9.74 -0.04 -2.07 16 3 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 4 C -0.13 -3.80 6.42 30.59 0.20 -3.60 16 5 C 0.49 21.83 8.02 87.90 0.71 22.53 16 6 O -0.61 -33.88 17.58 -3.01 -0.05 -33.93 16 7 N -0.60 -27.30 2.56 -798.44 -2.04 -29.34 16 8 C 0.25 14.28 5.00 85.63 0.43 14.71 16 9 C -0.62 -37.57 9.39 25.60 0.24 -37.33 16 10 H 0.04 2.73 7.81 -2.91 -0.02 2.71 16 11 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 12 N -0.93 -58.59 13.65 21.45 0.29 -58.29 16 13 Si 1.13 52.12 29.90 68.60 2.05 54.17 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 C 0.12 3.78 3.62 45.45 0.16 3.94 16 18 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 19 C -0.15 -3.88 8.28 71.98 0.60 -3.28 16 20 H 0.07 0.93 6.60 -2.39 -0.02 0.91 16 21 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.08 0.91 7.79 -2.39 -0.02 0.89 16 23 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 24 H 0.12 2.81 7.84 -2.39 -0.02 2.79 16 25 H 0.02 1.15 8.01 -2.38 -0.02 1.13 16 26 H -0.01 -0.77 7.78 -2.39 -0.02 -0.79 16 27 H 0.26 16.34 7.22 -92.71 -0.67 15.67 16 28 H 0.06 1.51 7.64 -2.39 -0.02 1.49 16 29 H 0.11 1.89 6.89 -2.39 -0.02 1.87 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -77.97 251.13 4.79 -73.18 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 1.21 Total: 2.00 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 3.33 Total: -7.78 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -1.75 Total: -87.63 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.05 Total: -33.93 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Total: -77.97 4.79 -73.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687798781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.081 kcal (2) G-P(sol) polarization free energy of solvation -77.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds