Wall clock time and date at job start Mon Mar 30 2020 02:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 119.99729 * 2 1 4 4 H 1.07996 * 119.99977 * 321.88272 * 3 2 1 5 5 C 1.38812 * 119.99807 * 141.89144 * 3 2 1 6 6 N 1.31612 * 119.99899 * 157.18980 * 5 3 2 7 7 Si 1.86801 * 120.00071 * 337.19050 * 5 3 2 8 8 H 1.48506 * 109.47149 * 95.67442 * 7 5 3 9 9 H 1.48503 * 109.47042 * 215.67405 * 7 5 3 10 10 H 1.48496 * 109.47206 * 335.67423 * 7 5 3 11 11 C 1.46495 * 119.99671 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46993 * 90.00743 * 11 2 1 13 13 C 1.53004 * 119.80712 * 248.97472 * 12 11 2 14 14 C 1.53262 * 60.66945 * 246.72678 * 13 12 11 15 15 H 1.09005 * 120.41781 * 112.16686 * 14 13 12 16 16 C 1.54476 * 117.90242 * 269.64697 * 14 13 12 17 17 O 1.44427 * 104.89991 * 38.85937 * 16 14 13 18 18 C 1.44419 * 105.27632 * 40.45125 * 17 16 14 19 19 H 1.09001 * 109.47537 * 265.54856 * 1 2 3 20 20 H 1.09003 * 109.47109 * 25.54624 * 1 2 3 21 21 H 1.08996 * 109.47519 * 145.54723 * 1 2 3 22 22 H 0.97004 * 119.99992 * 179.97438 * 6 5 3 23 23 H 1.08991 * 109.47588 * 330.00202 * 11 2 1 24 24 H 1.09003 * 109.46811 * 210.00046 * 11 2 1 25 25 H 1.08999 * 117.42951 * 354.34704 * 13 12 11 26 26 H 1.08995 * 117.43575 * 139.04740 * 13 12 11 27 27 H 1.08997 * 110.37606 * 279.96472 * 16 14 13 28 28 H 1.09006 * 110.36972 * 157.73879 * 16 14 13 29 29 H 1.09005 * 110.37096 * 78.31756 * 18 17 16 30 30 H 1.08993 * 110.37611 * 200.65561 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7824 2.0215 -0.5773 5 6 3.3158 1.3141 0.7419 6 7 4.2018 2.2332 0.4218 7 14 3.6277 0.1821 2.1947 8 1 4.4679 -0.9623 1.7591 9 1 4.3310 0.9332 3.2655 10 1 2.3323 -0.3246 2.7145 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 6 1.7306 -2.9392 -1.9997 14 6 3.2504 -2.9848 -1.8069 15 1 3.6917 -3.6355 -1.0519 16 6 4.1424 -2.5409 -2.9874 17 8 3.4564 -1.4094 -3.5663 18 6 2.9605 -0.6496 -2.4427 19 1 -0.3634 -0.0798 1.0245 20 1 -0.3633 0.9272 -0.4432 21 1 -0.3634 -0.8474 -0.5813 22 1 5.0166 2.3230 0.9404 23 1 1.6084 -2.0281 0.5147 24 1 3.1498 -1.1382 0.5144 25 1 1.1200 -3.5198 -1.3082 26 1 1.3556 -2.8803 -3.0214 27 1 4.2325 -3.3446 -3.7182 28 1 5.1276 -2.2438 -2.6277 29 1 3.7637 -0.0621 -1.9977 30 1 2.1426 -0.0003 -2.7550 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689327943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:47 Heat of formation + Delta-G solvation = 15.631543 kcal Electronic energy + Delta-G solvation = -13232.620997 eV Core-core repulsion = 11030.116341 eV Total energy + Delta-G solvation = -2202.504656 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.82255 -35.82227 -33.79284 -31.55962 -28.51224 -26.62855 -25.64062 -25.05197 -21.30031 -20.23822 -18.98762 -16.91944 -15.67493 -15.38096 -15.00058 -14.51079 -13.84735 -13.46447 -12.91302 -12.72557 -12.41920 -12.01420 -11.84683 -11.52667 -11.03530 -10.84448 -10.60727 -10.41746 -10.38662 -9.74619 -9.51731 -9.36608 -8.76053 -8.52679 -6.83794 -6.03676 -3.44574 3.26901 3.43344 3.48894 3.95425 4.45408 4.48979 4.88276 5.16059 5.27254 5.33482 5.43713 5.48100 5.79869 5.93771 6.01651 6.09835 6.26075 6.31794 6.38949 6.44626 6.56208 6.63562 6.71050 6.72405 6.81520 7.35912 8.02397 8.35127 8.95588 9.67661 10.10156 11.11637 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035174 B = 0.015039 C = 0.013838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.844628 B = 1861.360062 C = 2023.000974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.608 5.608 3 C -0.270 4.270 4 H 0.080 0.920 5 C 0.038 3.962 6 N -0.896 5.896 7 Si 0.872 3.128 8 H -0.286 1.286 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.182 3.818 12 C -0.160 4.160 13 C -0.137 4.137 14 C -0.219 4.219 15 H 0.114 0.886 16 C 0.077 3.923 17 O -0.388 6.388 18 C 0.098 3.902 19 H 0.006 0.994 20 H 0.045 0.955 21 H 0.028 0.972 22 H 0.263 0.737 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -9.693 -2.896 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.331 5.331 3 C -0.398 4.398 4 H 0.097 0.903 5 C -0.163 4.163 6 N -0.537 5.537 7 Si 0.703 3.297 8 H -0.214 1.214 9 H -0.228 1.228 10 H -0.195 1.195 11 C 0.056 3.944 12 C -0.163 4.163 13 C -0.174 4.174 14 C -0.238 4.238 15 H 0.132 0.868 16 C 0.000 4.000 17 O -0.308 6.308 18 C 0.023 3.977 19 H 0.024 0.976 20 H 0.064 0.936 21 H 0.046 0.954 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.507 -9.495 -3.068 10.289 hybrid contribution 0.397 -0.714 1.200 1.452 sum -2.110 -10.209 -1.868 10.591 Atomic orbital electron populations 1.21077 0.84399 0.99172 0.97314 1.43982 1.00848 1.01732 1.86572 1.18781 1.06172 0.90732 1.24124 0.90289 1.25468 0.96884 0.96343 0.97586 1.69875 1.08530 1.35952 1.39329 0.86994 0.77995 0.80138 0.84618 1.21398 1.22789 1.19453 1.20502 0.96306 0.87914 0.89694 1.24222 1.02655 0.88870 1.00516 1.22865 0.92295 1.00351 1.01874 1.24108 0.93403 1.04201 1.02072 0.86781 1.22740 0.94656 0.88766 0.93833 1.89067 1.73335 1.38075 1.30282 1.22744 0.98930 0.92104 0.83972 0.97595 0.93613 0.95363 0.92664 0.93870 0.92373 0.88754 0.89282 0.89918 0.92049 0.90018 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.51 10.70 59.85 0.64 3.15 16 2 N -0.61 -14.31 2.25 -181.12 -0.41 -14.72 16 3 C -0.27 -7.33 8.89 -15.06 -0.13 -7.46 16 4 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 5 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 6 N -0.90 -26.71 13.97 55.49 0.78 -25.94 16 7 Si 0.87 21.95 25.10 -169.99 -4.27 17.68 16 8 H -0.29 -6.99 6.68 56.52 0.38 -6.61 16 9 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.18 3.94 4.96 -4.04 -0.02 3.92 16 12 C -0.16 -3.11 2.81 -152.85 -0.43 -3.54 16 13 C -0.14 -2.21 9.66 -26.59 -0.26 -2.47 16 14 C -0.22 -3.62 7.22 -88.83 -0.64 -4.26 16 15 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 16 C 0.08 1.26 7.53 37.93 0.29 1.55 16 17 O -0.39 -7.65 11.31 -35.23 -0.40 -8.05 16 18 C 0.10 2.08 6.11 37.93 0.23 2.31 16 19 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 20 H 0.05 0.89 8.00 -51.93 -0.42 0.48 16 21 H 0.03 0.50 8.11 -51.93 -0.42 0.07 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.04 0.85 7.98 -51.93 -0.41 0.43 16 24 H 0.06 1.38 3.38 -51.93 -0.18 1.21 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.97 8.04 -51.93 -0.42 1.55 16 30 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 245.47 15.07 3.70 3.70 Total: -1.00 -29.31 245.47 -5.39 -34.71 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.38 Total: -1.57 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.42 Total: -5.82 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.37 Total: -40.66 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.40 Total: -8.05 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.27 Total: 17.68 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.31 -5.39 -34.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689327943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.338 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds