Wall clock time and date at job start Mon Mar 30 2020 02:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 119.99729 * 2 1 4 4 H 1.07996 * 119.99977 * 321.88272 * 3 2 1 5 5 C 1.38812 * 119.99807 * 141.89144 * 3 2 1 6 6 N 1.31612 * 119.99899 * 157.18980 * 5 3 2 7 7 Si 1.86801 * 120.00071 * 337.19050 * 5 3 2 8 8 H 1.48506 * 109.47149 * 95.67442 * 7 5 3 9 9 H 1.48503 * 109.47042 * 215.67405 * 7 5 3 10 10 H 1.48496 * 109.47206 * 335.67423 * 7 5 3 11 11 C 1.46495 * 119.99671 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46993 * 90.00743 * 11 2 1 13 13 C 1.53004 * 119.80712 * 248.97472 * 12 11 2 14 14 C 1.53262 * 60.66945 * 246.72678 * 13 12 11 15 15 H 1.09005 * 120.41781 * 112.16686 * 14 13 12 16 16 C 1.54476 * 117.90242 * 269.64697 * 14 13 12 17 17 O 1.44427 * 104.89991 * 38.85937 * 16 14 13 18 18 C 1.44419 * 105.27632 * 40.45125 * 17 16 14 19 19 H 1.09001 * 109.47537 * 265.54856 * 1 2 3 20 20 H 1.09003 * 109.47109 * 25.54624 * 1 2 3 21 21 H 1.08996 * 109.47519 * 145.54723 * 1 2 3 22 22 H 0.97004 * 119.99992 * 179.97438 * 6 5 3 23 23 H 1.08991 * 109.47588 * 330.00202 * 11 2 1 24 24 H 1.09003 * 109.46811 * 210.00046 * 11 2 1 25 25 H 1.08999 * 117.42951 * 354.34704 * 13 12 11 26 26 H 1.08995 * 117.43575 * 139.04740 * 13 12 11 27 27 H 1.08997 * 110.37606 * 279.96472 * 16 14 13 28 28 H 1.09006 * 110.36972 * 157.73879 * 16 14 13 29 29 H 1.09005 * 110.37096 * 78.31756 * 18 17 16 30 30 H 1.08993 * 110.37611 * 200.65561 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7824 2.0215 -0.5773 5 6 3.3158 1.3141 0.7419 6 7 4.2018 2.2332 0.4218 7 14 3.6277 0.1821 2.1947 8 1 4.4679 -0.9623 1.7591 9 1 4.3310 0.9332 3.2655 10 1 2.3323 -0.3246 2.7145 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 6 1.7306 -2.9392 -1.9997 14 6 3.2504 -2.9848 -1.8069 15 1 3.6917 -3.6355 -1.0519 16 6 4.1424 -2.5409 -2.9874 17 8 3.4564 -1.4094 -3.5663 18 6 2.9605 -0.6496 -2.4427 19 1 -0.3634 -0.0798 1.0245 20 1 -0.3633 0.9272 -0.4432 21 1 -0.3634 -0.8474 -0.5813 22 1 5.0166 2.3230 0.9404 23 1 1.6084 -2.0281 0.5147 24 1 3.1498 -1.1382 0.5144 25 1 1.1200 -3.5198 -1.3082 26 1 1.3556 -2.8803 -3.0214 27 1 4.2325 -3.3446 -3.7182 28 1 5.1276 -2.2438 -2.6277 29 1 3.7637 -0.0621 -1.9977 30 1 2.1426 -0.0003 -2.7550 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689327943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:47 Heat of formation + Delta-G solvation = -3.756107 kcal Electronic energy + Delta-G solvation = -13233.461708 eV Core-core repulsion = 11030.116341 eV Total energy + Delta-G solvation = -2203.345367 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.28866 -37.60502 -35.34185 -33.63033 -30.02549 -28.24932 -27.54891 -26.53170 -23.17701 -21.54993 -20.57642 -18.80623 -17.44208 -16.94686 -16.69489 -16.12182 -15.56117 -15.11743 -14.80758 -14.36098 -13.99297 -13.66378 -13.37789 -13.26293 -12.69623 -12.41933 -12.29009 -12.19493 -12.04949 -11.76672 -11.01596 -10.94583 -10.60147 -10.21252 -8.75397 -8.20071 -5.57543 1.27717 1.39506 1.50126 2.41010 2.55835 2.95902 3.12976 3.39323 3.74185 3.88942 3.98038 4.02167 4.42671 4.59719 4.66882 4.70452 4.74325 4.79111 4.88264 4.94525 5.01480 5.08679 5.12839 5.14202 5.27341 5.82702 5.95386 6.17340 6.99125 7.63252 8.06316 8.99517 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035174 B = 0.015039 C = 0.013838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.844628 B = 1861.360062 C = 2023.000974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.621 5.621 3 C -0.253 4.253 4 H 0.040 0.960 5 C -0.016 4.016 6 N -0.945 5.945 7 Si 0.936 3.064 8 H -0.274 1.274 9 H -0.309 1.309 10 H -0.259 1.259 11 C 0.181 3.819 12 C -0.195 4.195 13 C -0.109 4.109 14 C -0.199 4.199 15 H 0.137 0.863 16 C 0.067 3.933 17 O -0.400 6.400 18 C 0.110 3.890 19 H 0.016 0.984 20 H 0.039 0.961 21 H 0.058 0.942 22 H 0.262 0.738 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.123 0.877 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 -12.915 -2.564 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.345 5.345 3 C -0.383 4.383 4 H 0.058 0.942 5 C -0.212 4.212 6 N -0.589 5.589 7 Si 0.765 3.235 8 H -0.201 1.201 9 H -0.237 1.237 10 H -0.183 1.183 11 C 0.056 3.944 12 C -0.198 4.198 13 C -0.145 4.145 14 C -0.218 4.218 15 H 0.155 0.845 16 C -0.010 4.010 17 O -0.319 6.319 18 C 0.033 3.967 19 H 0.035 0.965 20 H 0.057 0.943 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.052 0.948 25 H 0.141 0.859 26 H 0.110 0.890 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.441 -12.759 -2.743 13.497 hybrid contribution 0.645 0.282 0.969 1.198 sum -2.796 -12.477 -1.774 12.909 Atomic orbital electron populations 1.21172 0.82192 1.00238 0.98363 1.44115 1.02323 1.01255 1.86799 1.18593 1.05946 0.91342 1.22445 0.94244 1.26020 0.96907 0.98299 0.99999 1.70004 1.09356 1.38794 1.40731 0.85958 0.78246 0.78482 0.80808 1.20137 1.23741 1.18307 1.20518 0.95336 0.87464 0.91125 1.23918 1.07239 0.89753 0.98905 1.22983 0.92252 0.96876 1.02412 1.24304 0.93984 1.01714 1.01776 0.84501 1.23054 0.94351 0.88480 0.95070 1.89048 1.73755 1.39088 1.30031 1.22302 0.96828 0.92690 0.84876 0.96537 0.94255 0.92385 0.92902 0.90947 0.94829 0.85888 0.88959 0.86425 0.92146 0.94433 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.72 10.70 127.77 1.37 6.09 16 2 N -0.62 -28.64 2.25 -726.95 -1.64 -30.28 16 3 C -0.25 -14.14 8.89 84.03 0.75 -13.39 16 4 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 5 C -0.02 -0.89 5.29 84.86 0.45 -0.44 16 6 N -0.94 -58.65 13.97 21.65 0.30 -58.34 16 7 Si 0.94 45.60 25.10 68.60 1.72 47.33 16 8 H -0.27 -12.69 6.68 99.48 0.66 -12.03 16 9 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 11 C 0.18 7.39 4.96 86.38 0.43 7.82 16 12 C -0.20 -7.16 2.81 -51.10 -0.14 -7.30 16 13 C -0.11 -2.99 9.66 30.68 0.30 -2.70 16 14 C -0.20 -5.78 7.22 -9.63 -0.07 -5.85 16 15 H 0.14 3.41 8.14 -2.38 -0.02 3.39 16 16 C 0.07 2.00 7.53 72.48 0.55 2.55 16 17 O -0.40 -15.38 11.31 -148.98 -1.69 -17.07 16 18 C 0.11 4.70 6.11 72.49 0.44 5.14 16 19 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 20 H 0.04 1.51 8.00 -2.39 -0.02 1.49 16 21 H 0.06 1.85 8.11 -2.39 -0.02 1.83 16 22 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.07 2.52 7.98 -2.39 -0.02 2.50 16 24 H 0.03 1.54 3.38 -2.39 -0.01 1.53 16 25 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.09 2.54 8.06 -2.39 -0.02 2.52 16 27 H 0.12 2.74 8.14 -2.39 -0.02 2.73 16 28 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.04 1.90 8.04 -2.38 -0.02 1.89 16 30 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -64.80 245.47 3.83 -60.97 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.06 Total: 5.49 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.06 Total: -8.09 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -1.34 Total: -88.63 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -1.69 Total: -17.07 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.72 Total: 47.33 kcal Total: -64.80 3.83 -60.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689327943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.218 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds