Wall clock time and date at job start Mon Mar 30 2020 02:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36943 * 120.00009 * 2 1 4 4 H 1.07995 * 120.00324 * 200.18342 * 3 2 1 5 5 C 1.38811 * 119.99824 * 20.17583 * 3 2 1 6 6 N 1.31622 * 120.00288 * 15.07694 * 5 3 2 7 7 Si 1.86802 * 120.00167 * 195.07769 * 5 3 2 8 8 H 1.48501 * 109.46971 * 84.99963 * 7 5 3 9 9 H 1.48495 * 109.47437 * 205.00180 * 7 5 3 10 10 H 1.48504 * 109.47023 * 325.00266 * 7 5 3 11 11 C 1.46493 * 120.00367 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47435 * 270.00194 * 11 2 1 13 13 C 1.52997 * 119.81050 * 109.76642 * 12 11 2 14 14 C 1.53000 * 60.57979 * 112.33978 * 13 12 11 15 15 H 1.08998 * 119.80527 * 247.66436 * 14 13 12 16 16 C 1.56519 * 116.81248 * 90.03968 * 14 13 12 17 17 O 1.44423 * 105.06179 * 320.93355 * 16 14 13 18 18 C 1.44420 * 105.27714 * 319.79694 * 17 16 14 19 19 H 1.09009 * 109.46768 * 275.10405 * 1 2 3 20 20 H 1.08998 * 109.47406 * 35.10308 * 1 2 3 21 21 H 1.08996 * 109.46714 * 155.10945 * 1 2 3 22 22 H 0.97000 * 120.00258 * 179.97438 * 6 5 3 23 23 H 1.08998 * 109.47154 * 149.99874 * 11 2 1 24 24 H 1.09004 * 109.47002 * 29.99880 * 11 2 1 25 25 H 1.09000 * 117.43924 * 219.99226 * 13 12 11 26 26 H 1.09002 * 117.43076 * 4.69161 * 13 12 11 27 27 H 1.08995 * 109.98579 * 202.15168 * 16 14 13 28 28 H 1.09000 * 110.60101 * 80.02740 * 16 14 13 29 29 H 1.08999 * 110.37415 * 281.68398 * 18 17 16 30 30 H 1.09003 * 110.46951 * 159.39082 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1799 1.2147 -0.3227 5 6 1.5195 2.3512 0.4146 6 7 0.3854 2.2853 1.0793 7 14 2.2810 4.0129 0.0293 8 1 1.8686 4.4428 -1.3310 9 1 1.8188 5.0122 1.0256 10 1 3.7609 3.9044 0.0867 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4432 13 6 1.7091 -2.9203 2.0112 14 6 3.2206 -3.0031 1.7885 15 1 3.6197 -3.6672 1.0219 16 6 4.1349 -2.5676 2.9819 17 8 3.4760 -1.4197 3.5600 18 6 2.9887 -0.6547 2.4362 19 1 -0.3633 0.0914 1.0237 20 1 -0.3634 0.8407 -0.5909 21 1 -0.3632 -0.9322 -0.4325 22 1 -0.0548 3.0996 1.3694 23 1 3.1499 -1.1385 -0.5133 24 1 1.6085 -2.0285 -0.5129 25 1 1.3558 -2.8554 3.0403 26 1 1.0697 -3.4818 1.3300 27 1 5.1228 -2.2921 2.6131 28 1 4.2146 -3.3690 3.7164 29 1 3.8009 -0.0859 1.9835 30 1 2.1867 0.0139 2.7492 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689327944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:49 Heat of formation + Delta-G solvation = 13.000440 kcal Electronic energy + Delta-G solvation = -13081.132069 eV Core-core repulsion = 10878.513320 eV Total energy + Delta-G solvation = -2202.618749 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.70747 -35.57613 -33.84920 -31.06716 -28.17131 -26.15472 -25.60241 -24.92955 -21.38248 -20.21789 -18.64510 -16.69731 -15.76357 -15.24590 -14.68262 -14.45739 -13.55475 -13.46522 -12.96083 -12.30486 -12.19967 -11.87228 -11.26089 -10.98683 -10.94077 -10.81683 -10.55421 -10.25235 -10.02355 -9.92535 -9.50922 -9.34752 -8.76182 -8.52161 -6.78544 -5.71894 -3.15809 3.39244 3.45826 3.46716 4.05519 4.49180 4.54020 5.11732 5.16708 5.35662 5.44291 5.48617 5.77386 5.83657 5.97837 6.02491 6.21682 6.34633 6.43899 6.58482 6.65288 6.73094 6.79056 6.93872 7.36612 7.40562 7.75009 7.82311 8.39037 9.24134 9.87940 10.36684 11.32726 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044680 B = 0.011909 C = 0.010629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.525992 B = 2350.609848 C = 2633.671650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.901 3.099 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.194 3.806 12 C -0.158 4.158 13 C -0.139 4.139 14 C -0.222 4.222 15 H 0.116 0.884 16 C 0.076 3.924 17 O -0.387 6.387 18 C 0.097 3.903 19 H 0.029 0.971 20 H 0.042 0.958 21 H -0.004 1.004 22 H 0.253 0.747 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -8.390 0.396 9.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.319 5.319 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.731 3.269 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.066 3.934 12 C -0.162 4.162 13 C -0.175 4.175 14 C -0.241 4.241 15 H 0.134 0.866 16 C -0.001 4.001 17 O -0.306 6.306 18 C 0.021 3.979 19 H 0.048 0.952 20 H 0.061 0.939 21 H 0.015 0.985 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.827 -8.154 0.664 9.032 hybrid contribution 0.365 0.858 -0.321 0.986 sum 4.193 -7.296 0.343 8.422 Atomic orbital electron populations 1.20784 0.82393 0.95326 0.99459 1.43958 1.01952 1.00425 1.85540 1.19175 0.96877 0.84865 1.37473 0.91387 1.24947 0.97830 0.98228 0.98548 1.70085 1.18665 1.26785 1.39417 0.86323 0.78671 0.84232 0.77629 1.21523 1.21769 1.20580 1.20198 0.95725 0.88347 0.89144 1.24338 1.02230 0.88420 1.01183 1.22791 0.92170 1.00740 1.01843 1.24421 0.93574 1.04213 1.01892 0.86622 1.23086 0.94552 0.88607 0.93900 1.89097 1.74753 1.36461 1.30333 1.22721 0.98442 0.92413 0.84298 0.95235 0.93878 0.98540 0.93719 0.93313 0.93958 0.89461 0.88825 0.92416 0.90043 0.91601 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.06 9.02 59.85 0.54 4.60 16 2 N -0.60 -14.76 2.73 -181.12 -0.50 -15.26 16 3 C -0.25 -6.80 8.74 -15.06 -0.13 -6.94 16 4 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 5 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 6 N -0.90 -25.99 10.66 55.49 0.59 -25.40 16 7 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.19 3.99 6.10 -4.05 -0.02 3.96 16 12 C -0.16 -3.06 2.77 -153.03 -0.42 -3.48 16 13 C -0.14 -2.36 9.64 -26.73 -0.26 -2.61 16 14 C -0.22 -3.52 7.33 -88.02 -0.65 -4.16 16 15 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 16 C 0.08 1.19 7.58 39.05 0.30 1.49 16 17 O -0.39 -7.70 11.30 -35.23 -0.40 -8.09 16 18 C 0.10 2.07 6.13 37.94 0.23 2.30 16 19 H 0.03 0.79 7.41 -51.92 -0.38 0.40 16 20 H 0.04 1.13 7.20 -51.93 -0.37 0.76 16 21 H 0.00 -0.09 7.83 -51.93 -0.41 -0.49 16 22 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.05 0.98 8.03 -51.93 -0.42 0.56 16 24 H 0.04 0.80 7.77 -51.93 -0.40 0.39 16 25 H 0.09 1.54 8.04 -51.93 -0.42 1.12 16 26 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 30 H 0.11 2.60 8.14 -51.93 -0.42 2.18 16 LS Contribution 249.22 15.07 3.76 3.76 Total: -1.00 -28.70 249.22 -6.56 -35.27 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.48 Total: -2.13 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.50 Total: -4.84 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.10 Total: -40.66 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.40 Total: -8.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.70 -6.56 -35.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689327944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.266 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds